https://github.com/beiko-lab/mimb_16s
Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology
Science Score: 13.0%
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Low similarity (4.5%) to scientific vocabulary
Last synced: 10 months ago
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Repository
Repository containing scripts and files for 16S gene community analysis chapter in Methods in Molecular Biology
Basic Info
- Host: GitHub
- Owner: beiko-lab
- Language: Shell
- Default Branch: master
- Size: 6.84 KB
Statistics
- Stars: 26
- Watchers: 7
- Forks: 10
- Open Issues: 1
- Releases: 0
Created over 9 years ago
· Last pushed about 7 years ago
https://github.com/beiko-lab/mimb_16S/blob/master/
# MiMB_16S ### Required Software Before running through this tutorial, you must have QIIME2 installed and activated. This has been tested with the QIIME2 2018.4 release, available at https://qiime2.org. ### Running the Scripts Run scripts in this order: 1. fetchFastq.sh * This script will fetch example data and metadata from EBI (~30mins) * Data from Permentier *et al.*, 2016 (DOI: 10.1111/1744-7917.12381) 3. qiimeCommands.sh * This script provides the commands for an entire QIIME analysis (~1hr 45mins)
Owner
- Name: Dr. Beiko's Lab
- Login: beiko-lab
- Kind: organization
- Location: Dalhousie University, Halifax, Nova Scotia
- Website: http://kiwi.cs.dal.ca/~beiko/
- Repositories: 33
- Profile: https://github.com/beiko-lab