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Open Source Science

xiangtaoxu.github.io

source codes for Xu Lab website

https://github.com/xiangtaoxu/xiangtaoxu.github.io

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.8%) to scientific vocabulary
Last synced: 10 months ago · JSON representation ·

Repository

source codes for Xu Lab website

Basic Info
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 1
  • Open Issues: 1
  • Releases: 0
Created almost 2 years ago · Last pushed over 1 year ago
Metadata Files
Readme Changelog License Citation

README.md

Visit xiangtaoxu.eeb.cornell.edu 🚀

TL;DR guideline of updating website

0. Direct update on github

You can add new files, e.g. create a new post markdown file, upload a new image, etc., or editing existing files directly on github with your browser.

For adding a new file, go to the folder you are editing/updating, click the Add file button on the upper right corner of the repo.

For updating an existing file, open the the file and directly update.

Each action will automatically create a git commit.

1. Update on your local machine (recommended)

This approach can combine multiple updates into a single commit and help you to practice git/Github operations.

1.0 First-time user

Please set up git on your local computer. Instructions can be found HERE

Then clone the repo on your local machine

git clone git@github.com:BioM2-Lab/xiangtaoxu.github.io.git

1.1 General updating workflow with git

1.1.1 Always pull the most updated version from Github

git pull origin main

1.1.2 Make modifications

Please refer the official documentation of the Lab Website Template below for details

Documentation

1.1.3 Commit your changes

For add new files or update existing files

git add [filename(s)]

For removing files folders

git rm filename(s)

git rm -r foldername(s)

Then git commit -m "[short sentences summarizing the commit]"

1.1.4 (optional) Preview your changes

For organization-owned pages, we have to preview locally, please refer to the Documentation in 1.1.2 to set up local preview with docker

1.2 Push your changes to Github

git push origin main

2. Create pull request

No matter you make updates on Github directly or locally and then push the commits, you need to create a pull request at THIS REPO

Click Pull requests on top of the repo and then click the green button on the upper right New pull request

Select compare across forks and make sure you change the head repository to below

example

And then create the pull request.

Citation (CITATION.cff) 

# citation metadata for the template itself

title: "Lab Website Template"
version: 1.2.2
date-released: 2024-06-05
url: "https://github.com/greenelab/lab-website-template"
authors:
  - family-names: "Rubinetti"
    given-names: "Vincent"
    orcid: "https://orcid.org/0000-0002-4655-3773"
  - family-names: "Greene"
    given-names: "Casey"
    orcid: "https://orcid.org/0000-0001-8713-9213"
cff-version: 1.2.0

GitHub Events

Total
  • Watch event: 1
  • Issue comment event: 3
  • Push event: 9
  • Pull request event: 5
Last Year
  • Watch event: 1
  • Issue comment event: 3
  • Push event: 9
  • Pull request event: 5

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 0
  • Total pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • xiangtaoxu (3)
  • coraldelmarvr (2)
  • camjay99 (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

.github/workflows/build-preview.yaml actions
  • actions/checkout v4 composite
  • actions/configure-pages v4 composite
  • crazy-max/ghaction-dump-context v2 composite
  • mxschmitt/action-tmate v3 composite
  • rossjrw/pr-preview-action v1.4.7 composite
  • ruby/setup-ruby v1.172.0 composite
.github/workflows/build-site.yaml actions
  • JamesIves/github-pages-deploy-action v4.5.0 composite
  • actions/checkout v4 composite
  • actions/configure-pages v4 composite
  • crazy-max/ghaction-dump-context v2 composite
  • mxschmitt/action-tmate v3 composite
  • ruby/setup-ruby v1.172.0 composite
.github/workflows/first-time-setup.yaml actions
  • actions/checkout v4 composite
  • actions/github-script v7 composite
  • crazy-max/ghaction-dump-context v2 composite
  • mxschmitt/action-tmate v3 composite
  • peterjgrainger/action-create-branch v3.0.0 composite
  • stefanzweifel/git-auto-commit-action v5 composite
.github/workflows/on-pages.yaml actions
.github/workflows/on-pull-request.yml actions
.github/workflows/on-push.yml actions
.github/workflows/on-schedule.yaml actions
.github/workflows/update-citations.yaml actions
  • actions/checkout v4 composite
  • actions/setup-python v5 composite
  • crazy-max/ghaction-dump-context v2 composite
  • mxschmitt/action-tmate v3 composite
  • peter-evans/create-pull-request v6 composite
  • stefanzweifel/git-auto-commit-action v5 composite
  • tj-actions/verify-changed-files v18 composite
.github/workflows/update-url.yaml actions
  • actions/checkout v4 composite
  • actions/configure-pages v4 composite
  • actions/github-script v7 composite
  • crazy-max/ghaction-dump-context v2 composite
  • mxschmitt/action-tmate v3 composite
  • stefanzweifel/git-auto-commit-action v5 composite
  • tj-actions/verify-changed-files v18 composite
.docker/Dockerfile docker
  • ruby 3.1.2 build
_cite/requirements.txt pypi
  • PyYAML *
  • diskcache *
  • google-search-results *
  • manubot *
  • python-dotenv *
  • rich *
Gemfile rubygems
  • jekyll-feed >= 0 development
  • jekyll-last-modified-at >= 0 development
  • jekyll-redirect-from >= 0 development
  • jekyll-sitemap >= 0 development
  • jekyll-spaceship >= 0 development
  • html-proofer ~> 5.0
  • jekyll ~> 4.3
  • webrick ~> 1.7
Gemfile.lock rubygems
  • Ascii85 1.1.0
  • addressable 2.8.1
  • afm 0.2.2
  • async 2.8.1
  • bundler 2.5.6
  • colorator 1.1.0
  • concurrent-ruby 1.2.2
  • console 1.23.4
  • em-websocket 0.5.3
  • ethon 0.16.0
  • eventmachine 1.2.7
  • ffi 1.15.5
  • fiber-annotation 0.2.0
  • fiber-local 1.0.0
  • forwardable-extended 2.6.0
  • gemoji 3.0.1
  • google-protobuf 3.22.0
  • hashery 2.1.2
  • html-proofer 5.0.8
  • http_parser.rb 0.8.0
  • i18n 1.12.0
  • io-event 1.4.4
  • jekyll 4.3.2
  • jekyll-feed 0.17.0
  • jekyll-last-modified-at 1.3.0
  • jekyll-redirect-from 0.16.0
  • jekyll-sass-converter 3.0.0
  • jekyll-sitemap 1.4.0
  • jekyll-spaceship 0.10.2
  • jekyll-watch 2.2.1
  • json 2.7.1
  • kramdown 2.4.0
  • kramdown-parser-gfm 1.1.0
  • liquid 4.0.4
  • listen 3.8.0
  • mercenary 0.4.0
  • mini_portile2 2.8.1
  • nokogiri 1.13.10
  • pathutil 0.16.2
  • pdf-reader 2.12.0
  • posix-spawn 0.3.15
  • public_suffix 5.0.1
  • racc 1.6.2
  • rainbow 3.1.1
  • rake 13.1.0
  • rb-fsevent 0.11.2
  • rb-inotify 0.10.1
  • rexml 3.2.5
  • rouge 3.30.0
  • ruby-rc4 0.1.5
  • safe_yaml 1.0.5
  • sass-embedded 1.58.3
  • terminal-table 3.0.2
  • timers 4.3.5
  • ttfunk 1.7.0
  • typhoeus 1.4.1
  • unicode-display_width 2.4.2
  • webrick 1.8.1
  • yell 2.2.2
  • zeitwerk 2.6.13