https://github.com/benstemon/penstemon_comparative_genomics
Ongoing comparative genomics project with various Penstemon genomes
Science Score: 13.0%
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Low similarity (4.0%) to scientific vocabulary
Last synced: 10 months ago
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Repository
Ongoing comparative genomics project with various Penstemon genomes
Basic Info
- Host: GitHub
- Owner: benstemon
- Language: Shell
- Default Branch: main
- Size: 1.08 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Created over 3 years ago
· Last pushed about 3 years ago
https://github.com/benstemon/penstemon_comparative_genomics/blob/main/
## Repository for _Penstemon_ comparative genomics project(s) ### [Dot plots and synteny plots with reference-quality genomes](jcvi_dotplot_synteny/) Generate dot plots and karyotype plots with reference-quality genomes. ### [Reference-guided assembly pipeline for non-reference-quality genomes](refguided_denovo_assembly/) This directory contains information to generate _Penstemon_ genome assemblies with short-read Illumina data, as well as performing genome annotations. The assembly pipeline is a modified version of the pipeline described in [Lischer & Shimizu 2017](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1911-6). ### [Orthogroup identification and gene family evolution](orthofinder_and_cafe) Identify orthogroups across all genomes -- reference-quality and reference-guided de-novo. Then, use these orthogroups in an an analysis of gene family evolution.
Owner
- Name: Ben Stone
- Login: benstemon
- Kind: user
- Twitter: benstemon
- Repositories: 2
- Profile: https://github.com/benstemon