https://github.com/berenslab/ephyspy
A Python package for electrophysiological feature extraction for patch-clamp experiments.
Science Score: 13.0%
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○Scientific vocabulary similarity
Low similarity (10.8%) to scientific vocabulary
Keywords
Repository
A Python package for electrophysiological feature extraction for patch-clamp experiments.
Basic Info
- Host: GitHub
- Owner: berenslab
- License: gpl-3.0
- Language: Jupyter Notebook
- Default Branch: main
- Homepage: https://ephyspy.readthedocs.io/
- Size: 23.4 MB
Statistics
- Stars: 4
- Watchers: 4
- Forks: 1
- Open Issues: 7
- Releases: 5
Topics
Metadata Files
README.md
EphysPy
Package to extract electrophysiological features from current clamp experiments.
This package provides an API to extract a multitude of features from voltage clamp recordings with the help of the AllenSDK.
Installation
The package can be installed via pip install ephyspy.
Alternatively, clone the package with https://github.com/berenslab/ephyspy.git and install using pip via pip install -e ./ephyspy.
Getting started
To get started see example.ipynb.
Documentation
All documentation can be found here.
Acknowledgments
This package builds on previous work by @ybernaerts, which was part of the Phenotypic variation of transcriptomic cell types in mouse motor cortex atlas and the AllenSDK.
Owner
- Name: Berens Lab @ University of Tübingen
- Login: berenslab
- Kind: organization
- Email: philipp.berens@uni-tuebingen.de
- Location: Tübingen, Germany
- Website: https://hertie.ai/data-science
- Repositories: 60
- Profile: https://github.com/berenslab
Department of Data Science at the Hertie Institute for AI in Brain Health, University of Tübingen
GitHub Events
Total
- Release event: 2
- Watch event: 1
- Delete event: 2
- Push event: 6
- Create event: 2
Last Year
- Release event: 2
- Watch event: 1
- Delete event: 2
- Push event: 6
- Create event: 2
Packages
- Total packages: 1
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Total downloads:
- pypi 15 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 4
- Total maintainers: 1
pypi.org: ephyspy
Package to extract summary statistics from electrophysiological data.
- Documentation: https://ephyspy.readthedocs.io/
- License: GPL-3.0-or-later
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Latest release: 0.0.8
published 11 months ago
Rankings
Maintainers (1)
Dependencies
- actions/checkout v3 composite
- actions/setup-python v4 composite
- codecov/codecov-action v3 composite
- sphinx *
- sphinx_rtd_theme *
- matplotlib >=3.4.2
- numpy >=1.23.5
- pandas >=1.5.3
- scikit-learn >=1.1.1
- scipy >=1.9.1