https://github.com/berenslab/retimgtools
Web-based tools for retinal image annotation and evaluation.
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.1%) to scientific vocabulary
Repository
Web-based tools for retinal image annotation and evaluation.
Basic Info
- Host: GitHub
- Owner: berenslab
- Language: Python
- Default Branch: main
- Homepage: http://r.etr.ist
- Size: 3.25 MB
Statistics
- Stars: 1
- Watchers: 3
- Forks: 0
- Open Issues: 0
- Releases: 3
Metadata Files
README.md
Retinal Image Annotation and Evaluation Tools
Demo
https://retimgtools.fly.dev
Run locally
Before running the application, place your images in the media directory. If it does not exist, create the necessary folders:
shell
mkdir -p media/annotate media/evaluate
Then, add your images to the corresponding directories. The database will be populated with these images when you run the populate-*.py script.
Install dependencies and set up the environment:
shell
pip install -r requirements.txt
python -c 'from django.core.management.utils import get_random_secret_key; print("SECRET_KEY="+get_random_secret_key())' > .env
echo "DEBUG=True" >> .env
python manage.py makemigrations
python manage.py migrate
python manage.py createsuperuser
python populate-evaluate-fundus.py
python manage.py runserver
You need to adapt the populate-*.py script to match your dataset.
Currently, the frontend is primitive and contains hardcoded elements as the project evolves. We plan to make it more flexible in the future, but for now, you may need to modify the templates (retimgann/templates/retimgann/*.html and retimgeval/templates/retimgeval/*.html) to suit your data.
Owner
- Name: Berens Lab @ University of Tübingen
- Login: berenslab
- Kind: organization
- Email: philipp.berens@uni-tuebingen.de
- Location: Tübingen, Germany
- Website: https://hertie.ai/data-science
- Repositories: 60
- Profile: https://github.com/berenslab
Department of Data Science at the Hertie Institute for AI in Brain Health, University of Tübingen
GitHub Events
Total
- Push event: 5
Last Year
- Push event: 5