https://github.com/bernatgel/regioner
An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
Science Score: 10.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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○DOI references
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○Academic links in README
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✓Committers with academic emails
2 of 12 committers (16.7%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (1.4%) to scientific vocabulary
Keywords
bioconductor
bioinformatics
genome
genomic-data-analysis
genomic-regions
permutation-test
randomization
rstats
Keywords from Contributors
bioconductor-package
gene
transcriptomics
proteomics
genomics-visualization
genomics
plotting-in-r
mass-spectrometry
metabolomics
core-package
Last synced: 5 months ago
·
JSON representation
Repository
An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests
Basic Info
- Host: GitHub
- Owner: bernatgel
- Language: R
- Default Branch: devel
- Size: 1.17 MB
Statistics
- Stars: 13
- Watchers: 1
- Forks: 3
- Open Issues: 10
- Releases: 0
Topics
bioconductor
bioinformatics
genome
genomic-data-analysis
genomic-regions
permutation-test
randomization
rstats
Created over 8 years ago
· Last pushed 9 months ago
Owner
- Name: Bernat Gel
- Login: bernatgel
- Kind: user
- Location: Barcelona, Spain
- Company: Germans Trias Research Institute (IGTP)
- Twitter: bernatgel
- Repositories: 4
- Profile: https://github.com/bernatgel
Bioinformatician at IGTP. Interested in cancer genomics, data analysis and visualization. Working on NF1, Hereditary Cancer and genetic diagnostics.
GitHub Events
Total
- Issues event: 3
- Issue comment event: 4
- Push event: 1
- Create event: 1
Last Year
- Issues event: 3
- Issue comment event: 4
- Push event: 1
- Create event: 1
Committers
Last synced: 7 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Bernat Gel | b****l@g****m | 90 |
| Bernat Gel | b****l@i****g | 29 |
| Nitesh Turaga | n****a@g****m | 14 |
| J Wokaty | j****y@s****u | 10 |
| Dan Tenenbaum | d****a@f****g | 9 |
| Herve Pages | h****s@f****g | 4 |
| vobencha | v****a@g****m | 2 |
| Hervé Pagès | h****s@f****g | 2 |
| vobencha | v****n@r****g | 2 |
| A Wokaty | a****y@s****u | 2 |
| Sonali Arora | s****a@f****g | 1 |
| Peter Chovanec | p****5 | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 7 months ago
Dependencies
DESCRIPTION
cran
- GenomicRanges * depends
- BSgenome * imports
- Biostrings * imports
- GenomeInfoDb * imports
- GenomicRanges * imports
- IRanges * imports
- S4Vectors * imports
- graphics * imports
- memoise * imports
- methods * imports
- parallel * imports
- rtracklayer * imports
- stats * imports
- tools * imports
- utils * imports
- BSgenome.Hsapiens.UCSC.hg19.masked * suggests
- BiocStyle * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests