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dataloading-mongo

Scripts to load data into a MongoDB service repository

https://github.com/sfu-ireceptor/dataloading-mongo

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (2.1%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Scripts to load data into a MongoDB service repository

Basic Info
  • Host: GitHub
  • Owner: sfu-ireceptor
  • License: lgpl-3.0
  • Language: Python
  • Default Branch: master
  • Homepage:
  • Size: 18.4 MB
Statistics
  • Stars: 0
  • Watchers: 6
  • Forks: 3
  • Open Issues: 1
  • Releases: 2
Created over 8 years ago · Last pushed 8 months ago
Metadata Files
Readme Contributing License Code of conduct Citation

README.md

iReceptor Mongo dataloader

This repository containst the code for loading AIRR compliant data into a Mongo repository. It is designed as both a standalone python program as well a docker container that exists as a component in the iReceptor Turnkey repository.

Owner

  • Name: iReceptor
  • Login: sfu-ireceptor
  • Kind: organization
  • Location: Vancouver, Canada

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
  - family-names: Corrie
    given-names: Brian
    orcid: https://orcid.org/0000-0003-3888-6495
title: "iReceptor: A platform for querying and analyzing antibody/B-cell and T-cell receptor repertoire data across federated repositories"
version: v4.0
doi: 10.1111/imr.12666

GitHub Events

Total
  • Delete event: 1
  • Issue comment event: 2
  • Push event: 8
  • Pull request event: 1
  • Create event: 1
Last Year
  • Delete event: 1
  • Issue comment event: 2
  • Push event: 8
  • Pull request event: 1
  • Create event: 1

Dependencies

requirements.txt pypi
  • PyYAML ==5.4
  • airr ==1.3.1
  • biopython ==1.77
  • certifi ==2020.4.5.1
  • chardet ==3.0.4
  • datetime ==4.5
  • idna ==2.9
  • numpy ==1.18.5
  • pandas ==1.0.4
  • plotly ==4.8.1
  • pymongo ==3.10.1
  • python-dateutil ==2.8.1
  • pytz ==2020.1
  • requests ==2.26.0
  • six ==1.15.0
  • urllib3 ==1.26.5
  • xlrd ==1.2.0
  • yamlordereddictloader ==0.4.0
Dockerfile docker
  • python 3.6 build