Releases | Open Source Science

Comrade v0.11.18

Updated to Makie 0.24

Merged pull requests: - Update to new Makie (#419) (@ptiede)

Closed issues: - Wishlist and (#18) - DimensionalData not found on Pkg.add("Comrade") due to malformed VLBISkyModels Project.toml (#417)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] 7 months ago

Comrade v0.11.17

Diff since v0.11.16

Cleaned up some items with respect to Observation Tables, especially for manipulation.

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] 8 months ago

Comrade v0.11.16

Diff since v0.11.15

Clean up FixedSkyModel
Updated dep for HypercubeTransform

Merged pull requests: - Switch everything to named dist (#416) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] 8 months ago

Comrade v0.11.15

Diff since v0.11.14

Fixed hypercube transform for instrument modeling

Merged pull requests: - Start the addition of support for instrument modeling with hypercube transforms (#415) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] 8 months ago

Comrade v0.11.14

Diff since v0.11.13

Added MultiSkyModel

Merged pull requests: - Add ability to have multiple grids for a sky model (#414) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] 8 months ago

Comrade v0.11.13

Diff since v0.11.12

Merged pull requests: - CompatHelper: bump compat for AdvancedHMC in [weakdeps] to 0.8, (keep existing compat) (#408) (@github-actions[bot]) - Update documentation for BaselinePlot (#409) (@dominic-chang) - Add more flexible fluctuation code (#410) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] 9 months ago

Comrade - v0.11.12

Comrade v0.11.12

Diff since v0.11.11

Updated to DocumenterVitePress 0.2
Update to Pigeons 0.5
Remove ForwardDiff as a dep
Change the default admode to use Enzyme'
Make an intelligent heuristic for selecting the type of transformation to do in Optimization extension

Merged pull requests: - Update versions (#401) (@ptiede) - add git blame ignore (#402) (@ptiede) - Update to the new version of Vitepress (#407) (@ptiede)

Closed issues: - Standardize the multifrequency and multisource data format and model interface (#343) - Make plotting model closures less cumbersome (#403) - Calling dimension on post always returns one (#404)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] 10 months ago

Comrade - v0.11.11

Comrade v0.11.11

Diff since v0.11.10

Fixed small plotting bugs
Tweaked how Disk sampling works to try to help the GC out.

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] 11 months ago

Comrade - v0.11.10

Comrade v0.11.10

Diff since v0.11.9

Fixed labels bug in plotcaltable
- Fixed addfractionalnoise for Coherencies when feeds are missing.

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] 12 months ago

Comrade - v0.11.9

Comrade v0.11.9

Diff since v0.11.8

Update to AdvancedHMC 0.7
Switch instrument transform to a loop to prevent Enzyme allocation on reverse pass
add_fractional_noise now works with Closures.

Merged pull requests: - Add fractional noise to closures (#397) (@ptiede) - Switch instrument transform to an explicit lop (#398) (@ptiede) - CompatHelper: bump compat for AdvancedHMC in [weakdeps] to 0.7, (keep existing compat) (#399) (@github-actions[bot])

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] 12 months ago

Comrade - v0.11.8

Comrade v0.11.8

Diff since v0.11.7

Update to ComradeBase 0.9 (rotated grids now possible)
Don't reorder coherencies because of eht-imaging issues

Merged pull requests: - Update to ComradeBase 0.9 (#396) (@ptiede)

Closed issues: - ascube function causing an error (#392)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] 12 months ago

Comrade - v0.11.7

Comrade v0.11.7

Diff since v0.11.6

@erandichavez rewrote the plotting interface, and now Makie can automatically plot everything!
- All tutorials now use the new plotting interface and Makie0.22

Merged pull requests: - adding dataplots.jl (#385) (@erandichavez) - CompatHelper: bump compat for Makie in [weakdeps] to 0.22, (keep existing compat) (#387) (@github-actions[bot]) - Switch the plotting for all examples to Makie (#388) (@ptiede) - CompatHelper: add new compat entry for RecipesBase at version 1, (keep existing compat) (#389) (@github-actions[bot]) - CompatHelper: add new compat entry for Measurements at version 2, (keep existing compat) (#390) (@github-actions[bot])

Closed issues: - Multi-frequency support (#280)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 1 year ago

Comrade - v0.11.6

Comrade v0.11.6

Diff since v0.11.5

Fixed dumb bug in mf instrument modeling

Merged pull requests: - Fix bug in mf SiteLookup (#386) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 1 year ago

Comrade - v0.11.5

Comrade v0.11.5

Diff since v0.11.4

Added experimental multdomain modeling support
- Improved speed for threaded extensions
- Added Adapt for LazySlice so that it executes on the GPU automatically

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 1 year ago

Comrade - v0.11.4

Comrade v0.11.4

Diff since v0.11.3

Added proper frequency tracking for the instrumental modeling
- Added frequency tracking in CalTable
- Fixed a large number of quirks and inconsistencies in SiteArray
- Updated to Enzyme 0.13 generic
- Updated to Pyehtim 0.2

Merged pull requests: - Multifrequency support for instrument modeling (#383) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 1 year ago

Comrade - v0.11.3

Comrade v0.11.3

Diff since v0.11.2

Reenabled more recent versions of Enzyme.
- Updated to StructArrays 0.7

Merged pull requests: - CompatHelper: bump compat for StructArrays to 0.7, (keep existing compat) (#381) (@github-actions[bot]) - Bump codecov/codecov-action from 4 to 5 (#382) (@dependabot[bot])

Closed issues: - Compiler error in comrade_opt: AssertionError: sz == sizeof(Int) (#379)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 1 year ago

Comrade - v0.11.2

Comrade v0.11.2

Diff since v0.11.1

Proper phase wrapping for phase priors
- Update enzyme dep

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 1 year ago

Comrade - v0.11.1

Comrade v0.11.1

Diff since v0.11.0

Fix chi2 bug that doesn't filter out NaN's before computing them
- Restrict version of Enzyme until the newer versions stabilize

Merged pull requests: - Update style.css (#375) (@dominic-chang) - CompatHelper: bump compat for DimensionalData to 0.29, (keep existing compat) (#376) (@github-actions[bot]) - Update Documentation.yml (#377) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 1 year ago

Comrade - v0.11.0

Comrade v0.11.0

Diff since v0.10.5

Breaking Changes

Comrade is now only ADable with Enzyme
to specify the AD mode use the admode kwarg in the VLBIPosterior constructor
Only support Julia versions 1.10 and later
Enzyme is an extension now and must be loaded before trying to take a derivative
Can no longer specify adtype in sample and comrade_opt calls. The AD is specified in VLBIPosterior
Removed a large number of rules since they are no longer needed

New features

Added instrumentmodel(post, x) method that will produce the full Jones matrix for the instrument
Added forward_jones(J, instrument) to create specific instrumental Jones matrices given some instrument parameters
Added corr_image_prior to automatically construct a correlated image prior for imaging

Updates

Added a Pigeons docs page
Changed polarized example to make an image of M87*
Removed a large number of unused files
More EnzymeRules.inactive calls
Fixed datatable so that it preserves SOA
Tried to remove anonymous functions since they don't serialize well.

Merged pull requests: - Make Enzyme the only compatible AD engine (#364) (@ptiede) - Rework ad to prevent compiling the same gradient multiple times (#374) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 1 year ago

Comrade - v0.10.5

Comrade v0.10.5

Diff since v0.10.4

Fixed bug in ScanSeg when there is only a single site

Merged pull requests: - Bump julia-actions/setup-julia from 1 to 2 (#360) (@dependabot[bot]) - Update style.css (#361) (@dominic-chang) - Push fix (#366) (@ptiede)

Closed issues: - save does not preserve the image center (#263)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 1 year ago

Comrade - v0.10.4

Comrade v0.10.4

Diff since v0.10.3

Updated tutorials and changed docs
- weakened check on apply_fluctuations

Merged pull requests: - Try to get doc examples to look nice (#357) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 1 year ago

Comrade - v0.10.3

Comrade v0.10.3

Diff since v0.10.2

homogenized JonesSandwich
- Switched docs to Vitepress

Merged pull requests: - Try vitepress (#354) (@ptiede) - Update docs (#355) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 2 years ago

Comrade - v0.10.2

Comrade v0.10.2

Diff since v0.10.1

Fix adtype specialization in AdvancedHMC specialization
- Add some Enzyme inactive rules to ensure AD compiles.

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 2 years ago

Comrade - v0.10.1

Comrade v0.10.1

Diff since v0.10.0

Bug fix on initialization of AdvancedHMC

Merged pull requests: - CompatHelper: bump compat for Dynesty to 0.4 for package ComradeDynesty, (keep existing compat) (#353) (@github-actions[bot])

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 2 years ago

Comrade - v0.10.0

Comrade v0.10.0

Diff since v0.9.4

Breaking Instrument modeling has been rewritten to remove the need for a user to construct the cache
- Breaking Jones models are now specified structurally and computed when the array is actually set
- Breaking Now use VLBISkyModels 0.5 and ComradeBase 0.7
- Breaking Posterior has been renamed VLBIPosterior
- Breaking RadioLikelihood has been removed. Now the user must construct the SkyModel and InstrumentModel
- Breaking caltable now only accepts the newly formed SiteArray
- Breaking residual(s)/chi2 now work on the VLBIPosterior object directly.
- Breaking all interface packages are now extensions. See docs for explicit new names
- Breaking optimization is now done with the comrade_opt function.
- The prior is now evaluated with Enzyme and a few new rules have been added
- The priors are now specified with just NamedTuples and are converted to distributions internally

Merged pull requests: - Complete refactor and rewrite of instrument modeling (#346) (@ptiede) - Bump julia-actions/cache from 1 to 2 (#350) (@dependabot[bot])

Closed issues: - 2 station array with FixedSeg breaks the JonesModel (#303) - Allow for station->time ordering for gain design matrix (#305) - Roadmap to 0.11 (#341)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 2 years ago

Comrade - v0.9.4

Comrade v0.9.4

Diff since v0.9.3

Temp hard upper bound as refactor is ongoing

Merged pull requests: - Bump julia-actions/setup-julia from 1 to 2 (#344) (@dependabot[bot])

Closed issues: - Make HMC sampler resumable (#337)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 2 years ago

Comrade - v0.9.3

Comrade v0.9.3

Diff since v0.9.2

Changed sampler backend to PosteriorSamples. This allows for nested structural vectors to be easily accessible.
- Removed HierarchicalCalPrior since it was buggy and not used for anything
- Added AbstractJonesModel and IdealInstrument to model a perfect instrument

Merged pull requests: - Bump actions/setup-python from 1 to 5 (#333) (@dependabot[bot]) - Bump actions/checkout from 3 to 4 (#334) (@dependabot[bot]) - Bump actions/cache from 3 to 4 (#335) (@dependabot[bot]) - Bump codecov/codecov-action from 3 to 4 (#336) (@dependabot[bot]) - change sample output (#338) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 2 years ago

Comrade - v0.9.2

Comrade v0.9.2

Diff since v0.9.1

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 2 years ago

Comrade - v0.9.1

Comrade v0.9.1

Diff since v0.9.0

Switched to VLBISkyModels 0.4, ComradeBase 0.6
- Added ability to autodiff through analytic models in the image domain
- Improved the docs
- Improved show for posterior

Merged pull requests: - CompatHelper: add new compat entry for DimensionalData at version 0.25, (keep existing compat) (#332) (@github-actions[bot])

Closed issues: - JonesModel and other calibration data types are not exported (#328)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 2 years ago

Comrade - v0.9.0

Comrade v0.9.0

Diff since v0.8.1

Merged pull requests: - Separete the sky models from Comrade (#306) (@ptiede) - Add better reference station support (#308) (@ptiede) - update (#310) (@ptiede) - CompatHelper: bump compat for SciMLBase to 2 for package ComradeOptimization, (keep existing compat) (#318) (@github-actions[bot]) - CompatHelper: add new compat entry for Statistics at version 1, (keep existing compat) (#326) (@github-actions[bot])

Closed issues: - Incorrect dosctring for Radio Likelihood (#312) - Error while trying the Imaging a Black Hole using only Closure Quantities example (#313) - Pigeons deserialization of NFFT does not work (#316) - File polarizedgaussianall_corruptions.uvfits referenced in examples does not exist (#319)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 2 years ago

Comrade - v0.8.1

Comrade v0.8.1

Diff since v0.8.0

Merged pull requests: - CompatHelper: bump compat for TransformVariables to 0.8, (keep existing compat) (#282) (@github-actions[bot]) - CompatHelper: add new compat entry for DelimitedFiles at version 1, (keep existing compat) (#307) (@github-actions[bot])

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] over 2 years ago

Comrade - v0.8.0

Comrade v0.8.0

Diff since v0.7.8

Closed issues: - Slowdown with plotting a model image for certain difficult options (#261) - Image edge effects (#291)

Merged pull requests: - Separate out the eht-imaging dependency (#297) (@ptiede) - CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#298) (@github-actions[bot]) - CompatHelper: add new compat entry for Requires at version 1, (keep existing compat) (#300) (@github-actions[bot]) - CompatHelper: add new compat entry for JLD2 at version 0.4 for package ComradeAHMC, (keep existing compat) (#301) (@github-actions[bot]) - Allow AHMC to save directly to disk (#302) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 3 years ago

Comrade - v0.7.8

Comrade v0.7.8

Diff since v0.7.7

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 3 years ago

Comrade - v0.7.7

Comrade v0.7.7

Diff since v0.7.6

Merged pull requests: - Try to fix gradient bug (#296) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 3 years ago

Comrade - v0.7.6

Comrade v0.7.6

Diff since v0.7.5

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 3 years ago

Comrade - v0.7.5

Comrade v0.7.5

Diff since v0.7.4

Merged pull requests: - Switch to python call (#293) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 3 years ago

Comrade - v0.7.4

Comrade v0.7.4

Diff since v0.7.3

Closed issues: - Allow per stations gain and d-term segmentation priors (#279) - Typo in example of dev docs for AHMC autodiff in sampling (#290)

Merged pull requests: - Add per station segmentation schemes (and fixed option) (#292) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 3 years ago

Comrade - v0.7.3

Comrade v0.7.3

Diff since v0.7.2

Closed issues: - Move geometric model gradients to Enzyme (#251) - Mring pullback fails for tuples in certain circumstances (#266)

Merged pull requests: - Pt convolve (#288) (@ptiede) - Add enzyme rrule for modified geom (#289) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 3 years ago

Comrade - v0.7.2

Comrade v0.7.2

Diff since v0.7.1

Closed issues: - use LogDensityProblems interface (#284)

Merged pull requests: - Add LogDensityProblems interface (#286) (@ptiede) - revert to typed tables (#287) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 3 years ago

Comrade - v0.7.1

Comrade v0.7.1

Diff since v0.7.0

Closed issues: - Move chain and all other inference data to InferenceObjects.jl (#278)

Merged pull requests: - Use InferenceObjects (#281) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] almost 3 years ago

Comrade - v0.7.0

Comrade v0.7.0

Diff since v0.6.10

Closed issues: - Typo in Docs (#177) - Caches no longer work with intensity maps (#178) - Fix doc links (#181) - DensityInterface.jl link in Docs for Comrade.Posterior has a typo (#182) - Minor typos in docs. (#183) - Phasecenter optimization (#209)

Merged pull requests: - Start update to 0.7 (#169) (@ptiede) - Start updating examples for 0.7 (#188) (@ptiede) - Add relative gain transformation (#189) (@ptiede) - Add pigeons as a interface package (#208) (@ptiede) - Reintroduce threading (#210) (@ptiede) - fix polarization models (#229) (@ptiede) - Remove dependencies (#253) (@ptiede) - Get libraries working with 0.7 (#254) (@ptiede) - Add relative gains to priors and caching (#264) (@ptiede) - update readme (#277) (@ptiede)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 3 years ago

Comrade - v0.6.10

Comrade v0.6.10

Diff since v0.6.9

Closed issues: - Error when using Python backend for Plots.jl? (#184) - save function switches the image size in x and y direction (#186)

Scientific Software - Peer-reviewed - Julia
Published by github-actions[bot] about 3 years ago