https://github.com/bgctw/crossinverts.jl
Invert model parameter inversion across individuals.
Science Score: 26.0%
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○Scientific vocabulary similarity
Low similarity (9.4%) to scientific vocabulary
Repository
Invert model parameter inversion across individuals.
Basic Info
- Host: GitHub
- Owner: bgctw
- License: mit
- Language: Julia
- Default Branch: main
- Size: 402 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 5
- Releases: 0
Metadata Files
README.md
CrossInverts
Problem
When calibrating models across different individuals, some parameters should be kept the same constant in all individuals (fixed parameters), some are allowed to vary around a common mean across individuals (random parameters), and others may be allowed to vary freely (individual parameters).
This package helps with specifying priors and and dealing with population and individuals. Further, it helps providing different specification by different scenarios.
See the walkthrough in the documentation for example code.
Inversion specification
The user needs to specify for a given scenario - the model, i.e. ODESystem to be inverted at each individual - which parameters are optimized as fixed, random, and individual - which individuals take part in the inversion - priors of parameters and priors of uncertainty of random effects - observations and associated uncertainty
and optionally
- initial states and parameters (or let them infer from priors)
- a ProblemUpdater in case changes of optimized parameters propagate to other
parameters
Model creation
Based those specification the package creates - a function for forward simulation given a realization of fixed and random effects. - a Turing model to sample the posterior of the effects
Extracting results
The package helps to access specific effects and quantities for specific individuals in the list of sampled
Owner
- Name: Thomas Wutzler
- Login: bgctw
- Kind: user
- Repositories: 54
- Profile: https://github.com/bgctw
GitHub Events
Total
- Issue comment event: 3
- Push event: 9
- Pull request event: 6
- Create event: 5
Last Year
- Issue comment event: 3
- Push event: 9
- Pull request event: 6
- Create event: 5
Issues and Pull Requests
Last synced: 10 months ago
All Time
- Total issues: 0
- Total pull requests: 5
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 5
Past Year
- Issues: 0
- Pull requests: 5
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 5
Top Authors
Issue Authors
Pull Request Authors
- bgctw (17)
- github-actions[bot] (13)
- dependabot[bot] (3)
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Dependencies
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