comparativepathologyworkbench
Comparative Pathology Workbench
https://github.com/comparative-pathology/comparativepathologyworkbench
Science Score: 52.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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✓Institutional organization owner
Organization comparative-pathology has institutional domain (www.ed.ac.uk) -
○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.0%) to scientific vocabulary
Keywords
Repository
Comparative Pathology Workbench
Basic Info
- Host: GitHub
- Owner: Comparative-Pathology
- License: gpl-2.0
- Language: Python
- Default Branch: master
- Size: 42.6 MB
Statistics
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 9
- Releases: 1
Topics
Metadata Files
README.md
The Comparative Pathology Workbench
This repository is for a Python Django project that provides a Workbench for Comparative Pathologists.
Live Workbench Systems
The Edinburgh Helmsley GCA CPW
https://workbench-czi-cpw.mvm.ed.ac.uk/home/
The DERMATLAS CPW
https://workbench-canada-cpw.mvm.ed.ac.uk/home/
The Coeliac CPW
https://workbench-coeliac-cpw.mvm.ed.ac.uk/home/
Documentation
See the following Documents:
1 CPW Installation Guide
2 Current Live Configuration
3 WordPress Installation Guide
4 CPW Administration Guide
5 Installation Checklist
6 Web App Error Messages
7 REST Interface Error Messages
8 CPW Configuration Supplement
08_CPWConfigurationSupplement.md
Acknowledgements and References
This software was originally developed for use by the Center for Comparative Pathology, funded by the Chan-Zuckerberg Initiative.
This software was been further developed for use by the Edinburgh Gut Cell Atlas Project, funded by the Helmsley Charitable Trust.
This software was been further developed for use by the Gut Cell Atlas Crohn’s Disease Consortium funded by The Leona M. and Harry B. Helmsley Charitable Trust and is supported by a grant from Helmsley to The University of Edinburgh.
Owner
- Name: Centre for Comparative Pathology
- Login: Comparative-Pathology
- Kind: organization
- Website: https://www.ed.ac.uk/comparative-pathology
- Repositories: 3
- Profile: https://github.com/Comparative-Pathology
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: The Comparative Pathology Workbench
message: >-
This is the CCF for the Comparative Pathology Workbench
software
type: software
authors:
- given-names: Michael
family-names: Wicks
email: mwicks23@ed.ac.uk
affiliation: University of Edinburgh
orcid: 'https://orcid.org/0000-0002-4390-4654'
identifiers:
- type: url
value: >-
https://github.com/Comparative-Pathology/comparativepathologyworkbench
description: The Comparative Pathology Workbench Repository
repository-code: >-
https://github.com/Comparative-Pathology/comparativepathologyworkbench
url: 'https://workbench-czi-cpw.mvm.ed.ac.uk/home/'
repository: >-
https://github.com/Comparative-Pathology/comparativepathologyworkbench_static
repository-artifact: >-
https://github.com/Comparative-Pathology/comparativepathologyworkbench/releases/tag/Release-Candidate-1.0.0
abstract: >-
The Comparative Pathology Workbench (CPW) is a web browser
based visual analytics platform providing shared access to
an interactive “spreadsheet” style presentation of image
and associated analysis data.
keywords:
- Python
- Postgres
- Django
license: GPL-2.0
commit: '2023-03-29'
version: >-
https://github.com/Comparative-Pathology/comparativepathologyworkbench/releases/tag/Release-Candidate-1.0.0
date-released: '2023-03-29'
GitHub Events
Total
- Release event: 1
- Push event: 9
Last Year
- Release event: 1
- Push event: 9
Dependencies
- asgiref *
- certifi *
- chardet *
- click *
- coreapi *
- coreapi-cli *
- coreschema *
- dj-database-url *
- django *
- django-ckeditor *
- django-cors-headers *
- django-filter *
- django-frontend-forms *
- django-inlineedit *
- django-js-asset *
- django-settings-export *
- django-sortable-listview *
- django-widget-tweaks *
- djangorestframework *
- gunicorn *
- httpie *
- importlib-metadata *
- itypes *
- jinja2 *
- logilab-common *
- logilab-database *
- markdown *
- markupsafe *
- mypy-extensions *
- pipfile *
- psycopg2 *
- psycopg2-binary *
- pycryptodome *
- pygments *
- pysocks *
- python-dateutil *
- python-decouple *
- pytz *
- pyyaml *
- requests *
- requests-toolbelt *
- six *
- sqlparse *
- toml *
- typing-extensions *
- upgrade-requirements *
- uritemplate *
- urllib3 *
- uwsgi *
- whitenoise *
- yams *
- yapps2 *
- zipp *