https://github.com/bhattacharya-a-bt/nanonormiter
Pre-processing of NanoString normalization data, as described in "An approach for normalization and quality control for NanoString RNA expression data" (Bhattacharya and Hamilton et al, 2020)
Science Score: 23.0%
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Low similarity (4.9%) to scientific vocabulary
Last synced: 10 months ago
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Pre-processing of NanoString normalization data, as described in "An approach for normalization and quality control for NanoString RNA expression data" (Bhattacharya and Hamilton et al, 2020)
Basic Info
- Host: GitHub
- Owner: bhattacharya-a-bt
- Language: R
- Default Branch: master
- Size: 7.81 KB
Statistics
- Stars: 1
- Watchers: 2
- Forks: 3
- Open Issues: 3
- Releases: 0
Created about 6 years ago
· Last pushed almost 6 years ago
https://github.com/bhattacharya-a-bt/NanoNormIter/blob/master/
# NanoNormIter
Pre-processing of NanoString normalization data, as described in ["An approach for normalization and quality control for NanoString RNA expression data" (Bhattacharya and Hamilton et al, 2020)](https://academic.oup.com/bib/advance-article-abstract/doi/10.1093/bib/bbaa163/5891144?redirectedFrom=fulltext).
Note: this package includes functions used for pre-processing procedure outlined [here](https://www.biorxiv.org/content/10.1101/2020.04.08.032490v2). This is not a novel method, but provides an iterative framework for quality control and normalization of NanoString nCounter expression data. A tutorial is provided [here](https://github.com/bhattacharya-a-bt/CBCS_normalization/blob/master/CBCS_normalization_tutorial.pdf).
# Installing this package
```
devtools::install_github('bhattacharya-a-bt/NanoNormIter')
```
Owner
- Name: Arjun Bhattacharya
- Login: bhattacharya-a-bt
- Kind: user
- Location: Los Angeles
- Company: University of California, Los Angeles
- Website: arjun-bhattacharya.com
- Twitter: bhattac_a_bt
- Repositories: 4
- Profile: https://github.com/bhattacharya-a-bt
Postdoctoral fellow @ UCLA Computational Medicine