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Recent Releases of CleanX

CleanX - v0.1.14

Commits

  • 6f725e9: Add more installation instructions to the readme (Oleg Sivokon)
  • bb18b45: update workflow and dataframes.py (Candace Makeda Moore, MD)
  • 9152a5c: Use global values (PatriceJada)
  • 349b983: Move common values to the top (PatriceJada)
  • f1b5428: Update test_cleanx.py (PatriceJada)
  • e9bc5bc: Update medical-professionals.rst (andrew-f-murphy)
  • 0fa95b9: Update README.md (andrew-f-murphy)
  • 2ae2c1a: Update README.md (andrew-f-murphy)
  • 37269a2: fix zerototwofivefivesimplestnorming function (Candace Makeda Moore, MD)
  • c41e509: fix steps normalization bug (Candace Makeda Moore, MD)
  • 82f3b72: [fix] rescalerangefromhistogramlow_end (Oleg Sivokon)
  • 32c73af: add explanation on fixed normalize function (Candace Makeda Moore, MD)
  • 15e5f41: Port changes from image_functions to steps, fix failing test (Oleg Sivokon)
  • 8c3edbe: add explanation on fixed normalize function (Candace Makeda Moore, MD)
  • db06148: Try to make builds faster (Oleg Sivokon)
  • 43abb49: Try different solver (Oleg Sivokon)
  • 779aef0: Some info for bug report (Oleg Sivokon)
  • a3f65ca: Remove the alternative solver (doesn't work anyways) (Oleg Sivokon)
  • 789eb8d: Let's see if we can get rid of the defaults channel (Oleg Sivokon)
  • 1f45dc8: add patrice as author (Candace Makeda Moore, MD)
  • b4d07a3: misplaced file in bias_not (Candace Makeda Moore, MD)
  • cf07e29: Replace PNG logo with SVG one (Oleg Sivokon)
  • 4671688: Try changing text color based on color scheme (Oleg Sivokon)
  • 197740e: linted new helper function for inverting (Candace Makeda Moore, MD)
  • dcb3e82: step for inverting all images (Candace Makeda Moore, MD)
  • 03685bd: add documentation for make_inverted (Candace Makeda Moore, MD)
  • b6c7233: Set strict version requirements for dependencies in Lunux Py3.8 (wvxvw)
  • 61e7d94: new compare function with hash (Candace Makeda Moore, MD)
  • 8f0ad27: updated formedicalpeople notebook (Candace Makeda Moore, MD)
  • d2f5773: update biassnot throw duplicatesnote out (Candace Makeda Moore, MD)
  • c3e41e6: update duplicates-function in noclassesworkflow_example (Candace Makeda Moore, MD)
  • 66921ea: add auto dataset download (Candace Makeda Moore, MD)
  • 2edeeb3: add noclassesworkflow update male folder explanation (Candace Makeda Moore, MD)
  • 5b1dd78: Add files via upload (andrew-f-murphy)
  • 943817e: rename Andrew version (Candace Makeda Moore, MD)
  • a686c8d: Prepare to publish new version (wvxvw)
  • c9bc95c: [fix] Let's see if we can publish w/o anaconda package (wvxvw)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] almost 4 years ago

CleanX - v0.0.15

Commits

  • ab660b4: final relint? (Candace Makeda Moore, MD)
  • 80490c9: relint again (Candace Makeda Moore, MD)
  • 7a6fb58: relint (Candace Makeda Moore, MD)
  • caab80d: [fix] infinite loop in image comparison test (Oleg Sivokon)
  • 2dfad94: Try rebuilding documentation specifying correct version (Oleg Sivokon)
  • fc57d08: [fix] Wrong kind of checkout for documentation (Oleg Sivokon)
  • d0d3587: temporary (Candace Makeda Moore, MD)
  • 3e2c38a: Remove offending print (Oleg Sivokon)
  • 678abcf: more fixing notebooks (Candace Makeda Moore, MD)
  • 7a91266: Prevent matplitlib interactive ui from appearing during test (Oleg Sivokon)
  • 0e93db3: Restore accidentally destroyed documentation (Oleg Sivokon)
  • 1710916: Remove inherited Exception members from documentation (Oleg Sivokon) #34
  • 3a58149: [fix] Minor fixes in documentation + adding IPython refs (Oleg Sivokon) #34
  • 95e8105: More documentation for DICOM adapters (Oleg Sivokon) #34
  • aa49d6b: minor changes to readme (Candace Makeda Moore, MD)
  • 7afdc8d: special example race notebook (Candace Makeda Moore, MD)
  • b8b9dce: cosmetic notebook changes (Candace Makeda Moore, MD)
  • 78ed914: another notebook note (Candace Makeda Moore, MD)
  • d777064: test new badges (Candace Makeda Moore, MD)
  • cf14697: again (Candace Makeda Moore, MD)
  • e50a0a8: take away anaconda version for now (Candace Makeda Moore, MD)
  • de96742: change contact to discussions (Candace Makeda Moore, MD)
  • c97982d: [fix] Accidentally removed the code to upload packages to Anaconda (Oleg Sivokon)
  • 05f5447: [fix] Remove unnecessary documentation helpers, rename source dir (Oleg Sivokon)
  • 9b7bbf8: new release on badges (Candace Makeda Moore, MD)
  • be644e4: [fix] Add setup.py command to upload to Anaconda and use it in CI (Oleg Sivokon)
  • 4d94c47: Move paper and related files into its own directory (Oleg Sivokon)
  • f88ae88: Change links to badges in README (Oleg Sivokon)
  • e63efbf: Removed duplicate license (Oleg Sivokon)
  • e2d3bf2: add lisence copy to paper folder (Candace Makeda Moore, MD)
  • d412635: Add some tables to the README (Oleg Sivokon)
  • 7780ec5: [fix] Try different table formatting (Oleg Sivokon)
  • 8acb554: [wip] Paths in notebooks (Candace Makeda Moore, MD)
  • afce42c: change directory paths (Candace Makeda Moore, MD)
  • ed5b325: Add some get started examples (Oleg Sivokon)
  • 3e2bebe: [fix] Added the fix for missing old Tesseract (Oleg Sivokon)
  • 895493c: Renamed LICENSE_copy to LICENSE (Oleg Sivokon)
  • abeda6e: [fix] subprocess throws different errors if it cannot find an executable (Oleg Sivokon)
  • 83062bc: for improved workbook (Candace Makeda Moore, MD)
  • 3554267: fix duplicates notebook (Candace Makeda Moore, MD)
  • 3cf82a4: Split CLI code into submodules (Oleg Sivokon)
  • 92d7381: Add ripoutjpgs to DICOM readers (Oleg Sivokon)
  • 2b3bfc5: Add test for image extraction, closes #40 (Oleg Sivokon)
  • bc59336: [fix] PEP8 (Oleg Sivokon)
  • 93cca3e: Update README to reflect the CLI changes (Oleg Sivokon)
  • bcbd6cb: Split showimagesin_df into two functions (Oleg Sivokon)
  • 04c938a: Add test for findcloseimages (Oleg Sivokon)
  • f6a28fd: [fix] Try to do shell expansion. May be helpful on Windows (Oleg Sivokon)
  • 7143d8f: intermittant changes (Candace Makeda Moore, MD)
  • d0180da: update notebooks1 (Candace Makeda Moore, MD)
  • 88bd2d4: futher update notebooks (Candace Makeda Moore, MD)
  • a9bc057: fix readme (Candace Makeda Moore, MD)
  • 3dbee6a: another cosmetic readme change (Candace Makeda Moore, MD)
  • 787ca99: readme (Candace Makeda Moore, MD)
  • 3b1a1a0: updating readme (Candace Makeda Moore, MD)
  • be39c7f: readmefixes badges (Candace Makeda Moore, MD)
  • f2cfbb5: binder changes (Candace Makeda Moore, MD)
  • 51006ec: update binder notebook (Candace Makeda Moore, MD)
  • d05dd6e: more binder updates (Candace Makeda Moore, MD)
  • 9d39716: Add code and CI job to generate conda environment files (Oleg Sivokon)
  • 4b70a9a: Reduce verbosity in conda installs (Oleg Sivokon)
  • 0101040: [fix] Windows slashes in path (Oleg Sivokon)
  • b9f3375: Add Developer's Guide (Oleg Sivokon)
  • 9e29304: Add medical professional docs to the rest of the docs (Oleg Sivokon)
  • b390cc1: Update minor version of setup-conda due to CVE (Oleg Sivokon)
  • 187b33d: ignore DS_Store (Patrice Jada)
  • 37bf117: Move logo file to home dir (Patrice Jada)
  • 8d26658: Reorganize README.md landing page (Patrice Jada)
  • a0ec823: Note about Python 3.10 not being tested yet. (Oleg Sivokon)
  • b494c4d: [fix] Documentation about Anaconda development workflow (Oleg Sivokon)
  • 5b462c6: [fix] Prevent conda from randomly updating Python version (Oleg Sivokon)
  • 9bb14bb: new image quality functions (Candace Makeda Moore, MD)
  • aed6ddc: Added back changes from .gitignore (Candace Makeda Moore, MD)
  • 4824fb7: fixtest code and linting (Candace Makeda Moore, MD)
  • e02429d: relint (Candace Makeda Moore, MD)
  • 6a6215b: image_functions fix histofunct (Candace Makeda Moore, MD)
  • b718c4f: update init.py with new functions (Candace Makeda Moore, MD)
  • 3786364: update init.py with new functions (Candace Makeda Moore, MD)
  • 11e93a1: fix testing output (Candace Makeda Moore, MD)
  • f4d7516: update __fix testing again (Candace Makeda Moore, MD)
  • 0685649: fix testing output, by temporarily not testing imagetohist (Candace Makeda Moore, MD)
  • d479c5f: Restore the header from README (Oleg Sivokon)
  • 2979ce9: hjfk unscrewing up readme (Candace Makeda Moore, MD)
  • cac13f8: still fixing readme mess (Candace Makeda Moore, MD)
  • fb13ac0: still fixing readme mess (Candace Makeda Moore, MD)
  • b90b6de: still fixing readme mess (Candace Makeda Moore, MD)
  • c535ba5: still fixing readme mess (Candace Makeda Moore, MD)
  • 5915776: still fixing readme (Candace Makeda Moore, MD)
  • aefe5f9: again (Candace Makeda Moore, MD)
  • db2ed8b: fixes readme (Candace Makeda Moore, MD)
  • 9ecd91e: more readme fixes (Candace Makeda Moore, MD)
  • 58e2072: more readme fixes (Candace Makeda Moore, MD)
  • a022b7b: more readme fixes (Candace Makeda Moore, MD)
  • 396df1b: more readme fixes, again (Candace Makeda Moore, MD)
  • 581157a: more readme fixes (Candace Makeda Moore, MD)
  • 3f3d82d: more readme fixes, again (Candace Makeda Moore, MD)
  • de360c7: more readme fixes, again2 (Candace Makeda Moore, MD)
  • 74bc63f: more readme fixes, again3 (Candace Makeda Moore, MD)
  • 777b3f0: badges fix (Candace Makeda Moore, MD)
  • 8f8e6ad: add salting step (Candace Makeda Moore, MD)
  • 86bd39d: lint salting step (Candace Makeda Moore, MD)
  • 51bb5e8: fix salt with returning 2 values (Candace Makeda Moore, MD)
  • b26c536: more image augmenting steps for pipeline (Candace Makeda Moore, MD)
  • 569a0a2: linting new steps for pipeline (Candace Makeda Moore, MD)
  • 4c207cf: add testing on new steps (Candace Makeda Moore, MD)
  • 090285d: lint add testing on new steps (Candace Makeda Moore, MD)
  • ae69ef0: add testing on new steps,linted and init fixed (Candace Makeda Moore, MD)
  • 965e8c1: remove salt function (Candace Makeda Moore, MD)
  • 27e365b: [fix] New steps missing pickle helpers (Oleg Sivokon)
  • 6853e2a: lint oleg's pickle fixes (Candace Makeda Moore, MD)
  • 6905b61: fix oleg's pickle and tests (Candace Makeda Moore, MD)
  • 4d03864: lint oleg's pickle fixes again (Candace Makeda Moore, MD)
  • 978e391: fix oleg's pickle and tests, refix (Candace Makeda Moore, MD)
  • 48929a3: Add aggregate steps (Oleg Sivokon)
  • cbd7e80: [fix] Pipleine tests due to changed interface (Oleg Sivokon)
  • 192c060: Simplify aggregate functionality (Oleg Sivokon)
  • 6c5d23b: change iwork init to include Aggregate (Candace Makeda Moore, MD)
  • a43357b: add a group histo function (Candace Makeda Moore, MD)
  • 5c8aaac: add proportion histo (Candace Makeda Moore, MD)
  • aa25d04: lint and fix changes (Candace Makeda Moore, MD)
  • b4dbd99: testing for histo aggregate funct (Candace Makeda Moore, MD)
  • 802c9e5: try to fix test (Candace Makeda Moore, MD)
  • be2278a: fixing test (Candace Makeda Moore, MD)
  • 3252082: add test for additional histo (Candace Makeda Moore, MD)
  • 4063975: fix show_images function by alt function (Candace Makeda Moore, MD)
  • 428cb35: fix show my images in df function (Candace Makeda Moore, MD)
  • 1359483: fix showimagesin_df function (Candace Makeda Moore, MD)
  • 3ac7989: new function for segmentation (Candace Makeda Moore, MD)
  • 27d659c: new function for segmentation,linted (Candace Makeda Moore, MD)
  • f8cb2d0: new function for segmentation, relinted times 2 (Candace Makeda Moore, MD)
  • c0e0cd5: new function for segmentation documentation (Candace Makeda Moore, MD)
  • e8222b1: improve segment function and test (Candace Makeda Moore, MD)
  • d5abef0: new function for segmentation remade, linting, testing (Candace Makeda Moore, MD)
  • ecd24da: improve segment function tests (Candace Makeda Moore, MD)
  • 0fb050f: fix paths in testing (Candace Makeda Moore, MD)
  • 10234a0: Enable easier local testing and lintin (Candace Makeda Moore, MD)
  • f21947e: last inside testing (Candace Makeda Moore, MD)
  • a23314f: Add some documentation about local testing and building (Oleg Sivokon)
  • 0e4e6dd: add binarize function and test (Candace Makeda Moore, MD)
  • 0328a3a: make one otsu more efficient (Candace Makeda Moore, MD)
  • d691db7: make otsu into stept (Candace Makeda Moore, MD)
  • 68d2390: add otsu lines as a step (Candace Makeda Moore, MD)
  • 3d3ba7b: add projection step (Candace Makeda Moore, MD)
  • 014d250: must lint on branch, new function pil-library free for rotate (Candace Makeda Moore, MD)
  • 4ad1b27: linted pill free rotation (Candace Makeda Moore, MD)
  • 8f7318d: multi-rotate function without PIL (Candace Makeda Moore, MD)
  • 7434b87: [fix] Let's see if fixing conda version helps with environment (Oleg Sivokon)
  • 45f6b90: [fix] PEP8 (Oleg Sivokon)
  • 0a0daca: [fix] Maybe we can prevent conda from updating this way (Oleg Sivokon)
  • ce4cb61: Path Wheel and fix the version of CI conda-related stuff (Oleg Sivokon)
  • e6cd2cd: Add note about installing tesseract libraries (Oleg Sivokon)
  • 9f3f108: go PIL free (Candace Makeda Moore, MD)
  • ec84690: update readme to leave off PIL + linting (Candace Makeda Moore, MD)
  • 0008e33: [fix] Don't escape glob expression (Oleg Sivokon)
  • 5d822ab: new function for total pixel (Candace Makeda Moore, MD)
  • 7e7b8fc: addd group pixelsum histos (Candace Makeda Moore, MD)
  • 596b73c: Let's see if explicitly requesting python in our environment helps (Oleg Sivokon)
  • fd3ac02: Let's see if anything done by metadata conversion is actually necessary (Oleg Sivokon)
  • 842c6d6: add a function to pull white frames (Candace Makeda Moore, MD)
  • 0643a87: better overall crop, update affil on paper (Candace Makeda Moore, MD)
  • 7b1b95d: fixing paper again? (Candace Makeda Moore, MD)
  • 736a546: minor documentation fix (Candace Makeda Moore, MD)
  • 0da37e7: image quality function and test (Candace Makeda Moore, MD)
  • 8a95692: update function (Candace Makeda Moore, MD)
  • 17de4f3: additional parameters to image quality matrix (Candace Makeda Moore, MD)
  • 2ed313b: further update quality function (Candace Makeda Moore, MD)
  • 60aebcb: fix failing test on image quality function (Candace Makeda Moore, MD)
  • ed098f5: test restored pipeline, and addition to quality matrix (Candace Makeda Moore, MD)
  • 8764e19: quality function demo explanation (Candace Makeda Moore, MD)
  • 8b0faa8: delete extra checkpoint file plus minor changes to docu (Candace Makeda Moore, MD)
  • 6bc95f2: fourier funct and testing updates (Candace Makeda Moore, MD)
  • 126f287: fourier step and test (Candace Makeda Moore, MD)
  • c80e1b6: projection step and test (Candace Makeda Moore, MD)
  • d087d64: contourimage step added (Candace Makeda Moore, MD)
  • 74eac50: cut and pad functions and testing for them (Candace Makeda Moore, MD)
  • 2bbfaab: add croporcut function and testing (Candace Makeda Moore, MD)
  • 3e059f1: better rotate function and test (Candace Makeda Moore, MD)
  • 36e4fd3: cleancrop step and test (Candace Makeda Moore, MD)
  • f33a2a3: [fix] serialization in CleanRotate (Oleg Sivokon)
  • 11e5b01: image noise matrix function (Candace Makeda Moore, MD)
  • aebaf5f: additional noise function, delete mistake placed file (Candace Makeda Moore, MD)
  • 1fd0606: update image quality notebook with noise matrix mention (Candace Makeda Moore, MD)
  • 072ebb3: noise in segmented function and test (Candace Makeda Moore, MD)
  • 6385fd0: improve segmented noise (Candace Makeda Moore, MD)
  • 6ec9fd6: segmented function correction (Candace Makeda Moore, MD)
  • 6515abe: segmented function correction (Candace Makeda Moore, MD)
  • ace1866: finished image quality notebook (Candace Makeda Moore, MD)
  • 4679132: more in image quality notebook (Candace Makeda Moore, MD)
  • 1234b8b: minor function to pick up inverts and test (Candace Makeda Moore, MD)
  • 11bf987: fix typos in additional_demos and CLI/dicom.py (Candace Makeda Moore, MD)
  • 89ca280: typo fixes in datasetprocessing and pydicomadapter (Candace Makeda Moore, MD)
  • e1ed61b: fix typos in dicom processing (Candace Makeda Moore, MD)
  • 722269a: fix imagework init and imagefunctions to line 600 typos (Candace Makeda Moore, MD)
  • 5b610e9: remove word idiots (Candace Makeda Moore, MD)
  • f374b80: fix typos and reword some docu for image_functions (Candace Makeda Moore, MD)
  • 5d74d15: finish fixing typos in image_work (Candace Makeda Moore, MD)
  • e26fab1: finish fixing typos in image_work (Candace Makeda Moore, MD)
  • a723718: documentation changes in Steps (Candace Makeda Moore, MD)
  • 9669d12: comment out test install trick (Candace Makeda Moore, MD)
  • e622529: update workflow for medical people (Candace Makeda Moore, MD)
  • 72c5665: [fix] Account for incomplete table in showimagesin_df (Oleg Sivokon)
  • 474d599: [fix] Add a cv2.imread wrapper that raises error when it returns None (Oleg Sivokon)
  • 1ec59b5: update example csv (Candace Makeda Moore, MD)
  • aa3e888: updates not to be pushed until latere (Candace Makeda Moore, MD)
  • 8e5b561: dfhjkdshfk unstash commit (Candace Makeda Moore, MD)
  • 0dc3552: updated noclassesworkflow_example.ipynb (Candace Makeda Moore, MD)
  • 3d95a41: cleaner looking notebook (Candace Makeda Moore, MD)
  • 226cd99: update affiliations paper (Candace Makeda Moore, MD)
  • 4a83815: [fix] image and delete bindier directory (Oleg Sivokon)
  • 5fe76ac: replace lost logo (Candace Makeda Moore, MD)
  • 4016400: Updating apt package information to generate documentation (Oleg Sivokon)
  • 9511c2f: [fix] genconda command changed (Oleg Sivokon)
  • c4fa374: [fix] anaconda command disappeared from CI images (Oleg Sivokon)
  • 6f725e9: Add more installation instructions to the readme (Oleg Sivokon)
  • bb18b45: update workflow and dataframes.py (Candace Makeda Moore, MD)
  • 9152a5c: Use global values (PatriceJada)
  • 349b983: Move common values to the top (PatriceJada)
  • f1b5428: Update test_cleanx.py (PatriceJada)
  • e9bc5bc: Update medical-professionals.rst (andrew-f-murphy)
  • 0fa95b9: Update README.md (andrew-f-murphy)
  • 2ae2c1a: Update README.md (andrew-f-murphy)
  • 37269a2: fix zerototwofivefivesimplestnorming function (Candace Makeda Moore, MD)
  • c41e509: fix steps normalization bug (Candace Makeda Moore, MD)
  • 82f3b72: [fix] rescalerangefromhistogramlow_end (Oleg Sivokon)
  • 32c73af: add explanation on fixed normalize function (Candace Makeda Moore, MD)
  • 15e5f41: Port changes from image_functions to steps, fix failing test (Oleg Sivokon)
  • 8c3edbe: add explanation on fixed normalize function (Candace Makeda Moore, MD)
  • db06148: Try to make builds faster (Oleg Sivokon)
  • 43abb49: Try different solver (Oleg Sivokon)
  • 779aef0: Some info for bug report (Oleg Sivokon)
  • a3f65ca: Remove the alternative solver (doesn't work anyways) (Oleg Sivokon)
  • 789eb8d: Let's see if we can get rid of the defaults channel (Oleg Sivokon)
  • 1f45dc8: add patrice as author (Candace Makeda Moore, MD)
  • b4d07a3: misplaced file in bias_not (Candace Makeda Moore, MD)
  • cf07e29: Replace PNG logo with SVG one (Oleg Sivokon)
  • 4671688: Try changing text color based on color scheme (Oleg Sivokon)
  • 197740e: linted new helper function for inverting (Candace Makeda Moore, MD)
  • dcb3e82: step for inverting all images (Candace Makeda Moore, MD)
  • 03685bd: add documentation for make_inverted (Candace Makeda Moore, MD)
  • b6c7233: Set strict version requirements for dependencies in Lunux Py3.8 (wvxvw)
  • 61e7d94: new compare function with hash (Candace Makeda Moore, MD)
  • 8f0ad27: updated formedicalpeople notebook (Candace Makeda Moore, MD)
  • d2f5773: update biassnot throw duplicatesnote out (Candace Makeda Moore, MD)
  • c3e41e6: update duplicates-function in noclassesworkflow_example (Candace Makeda Moore, MD)
  • 66921ea: add auto dataset download (Candace Makeda Moore, MD)
  • 2edeeb3: add noclassesworkflow update male folder explanation (Candace Makeda Moore, MD)
  • 5b1dd78: Add files via upload (andrew-f-murphy)
  • 943817e: rename Andrew version (Candace Makeda Moore, MD)
  • a686c8d: Prepare to publish new version (wvxvw)
  • c9bc95c: [fix] Let's see if we can publish w/o anaconda package (wvxvw)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] almost 4 years ago

CleanX - v0.1.13

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] about 4 years ago

CleanX - v0.1.12

Commits

  • a9bc057: fix readme (Candace Makeda Moore, MD)
  • 3dbee6a: another cosmetic readme change (Candace Makeda Moore, MD)
  • 787ca99: readme (Candace Makeda Moore, MD)
  • 3b1a1a0: updating readme (Candace Makeda Moore, MD)
  • be39c7f: readmefixes badges (Candace Makeda Moore, MD)
  • f2cfbb5: binder changes (Candace Makeda Moore, MD)
  • 51006ec: update binder notebook (Candace Makeda Moore, MD)
  • d05dd6e: more binder updates (Candace Makeda Moore, MD)
  • 9d39716: Add code and CI job to generate conda environment files (Oleg Sivokon)
  • 4b70a9a: Reduce verbosity in conda installs (Oleg Sivokon)
  • 0101040: [fix] Windows slashes in path (Oleg Sivokon)
  • b9f3375: Add Developer's Guide (Oleg Sivokon)
  • 9e29304: Add medical professional docs to the rest of the docs (Oleg Sivokon)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] over 4 years ago

CleanX - v0.1.11

Commits

  • 3e2bebe: [fix] Added the fix for missing old Tesseract (Oleg Sivokon)
  • 895493c: Renamed LICENSE_copy to LICENSE (Oleg Sivokon)
  • abeda6e: [fix] subprocess throws different errors if it cannot find an executable (Oleg Sivokon)
  • 83062bc: for improved workbook (Candace Makeda Moore, MD)
  • 3554267: fix duplicates notebook (Candace Makeda Moore, MD)
  • 3cf82a4: Split CLI code into submodules (Oleg Sivokon)
  • 92d7381: Add ripoutjpgs to DICOM readers (Oleg Sivokon)
  • 2b3bfc5: Add test for image extraction, closes #40 (Oleg Sivokon)
  • bc59336: [fix] PEP8 (Oleg Sivokon)
  • 93cca3e: Update README to reflect the CLI changes (Oleg Sivokon)
  • bcbd6cb: Split showimagesin_df into two functions (Oleg Sivokon)
  • 04c938a: Add test for findcloseimages (Oleg Sivokon)
  • f6a28fd: [fix] Try to do shell expansion. May be helpful on Windows (Oleg Sivokon)
  • 7143d8f: intermittant changes (Candace Makeda Moore, MD)
  • d0180da: update notebooks1 (Candace Makeda Moore, MD)
  • 88bd2d4: futher update notebooks (Candace Makeda Moore, MD)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] over 4 years ago

CleanX - v0.1.9

Commits

  • 100c0b5: text formatting (Candace Makeda Moore, MD)
  • a59ca86: workflow repair (Candace Makeda Moore, MD)
  • c0eac3f: fix azure? (Candace Makeda Moore, MD)
  • 80e05f1: more comments (Candace Makeda Moore, MD)
  • 22278e1: Initial work on matrix builds (only for Linux so far) (Oleg Sivokon)
  • bbc94f3: [fix] Specifying conda environment (Oleg Sivokon)
  • 3833a05: linting (Candace Makeda Moore, MD)
  • faf83b7: more documentation (Candace Makeda Moore, MD)
  • 7bd071d: pull out #garbage (Candace Makeda Moore, MD)
  • 3ebdabe: [fix] Linting and parents counting (Oleg Sivokon)
  • a6f5c48: clean workflow folder (Candace Makeda Moore, MD)
  • d604b52: Build conda packages on all supported systems (Oleg Sivokon) #20
  • 6f14e87: Try another Windows shell syntax... (Oleg Sivokon) #20
  • 58887ae: [fix] Prevent from installing new OpenCV, as it's broken on Macs (Oleg Sivokon) #20
  • 9af076d: [fix] Seems like we didn't go back far enough (Oleg Sivokon) #20
  • e99c449: [fix] Try to exclude Mac and Linux builds for Python 3.9 (Oleg Sivokon) #20
  • f0449e2: Add some debugging info for conda forge (Oleg Sivokon) #20
  • 536b688: [fix] conda list should be in the right environment (Oleg Sivokon) #20
  • 375028c: Let's try w/o anaconda channel (Oleg Sivokon) #20
  • d80726b: Try running releases in parallel collecting artifacts (Oleg Sivokon) #20
  • 3ec7ec6: Run sanity with multiple extra dependencies (Oleg Sivokon) #22
  • 1ab1d32: [fix] CLI tests should use sys.executable instead of python (Oleg Sivokon) #22
  • 498daf6: [fix] PyPI version of pandas needs, but doesn't install pytz (Oleg Sivokon) #22
  • c9c287c: [fix] Always upload artifacts (Oleg Sivokon) #22
  • ef59e9d: [fix] Apparently, if you tell easy_install to install it will (Oleg Sivokon) #22
  • 190ac41: Initial image processing pipeline code (Oleg Sivokon) #23
  • 6d9de95: [fix] incorrect batching in pipeline (Oleg Sivokon) #23
  • 1726df8: [fix] Apparently os.sched_getaffinity() is platform-dependent (Oleg Sivokon) #23
  • 1806d67: [fix] Hopefully this will fix multiprocessing issues (Oleg Sivokon) #23
  • 065c13e: rename,workflow,pipeline (Candace Makeda Moore, MD) #23
  • d4e4f5b: clean testing (Candace Makeda Moore, MD) #23
  • 73ff6fc: classy workflow (Candace Makeda Moore, MD) #23
  • aafc132: fixed function and test (Candace Makeda Moore, MD) #23
  • 3644d4a: fix minor lint (Candace Makeda Moore, MD) #23
  • 21c2725: histogram normalize class (Candace Makeda Moore, MD)
  • 136ecee: lint new class (Candace Makeda Moore, MD)
  • 95caf1f: dataframes documentation (Candace Makeda Moore, MD)
  • a0043d3: lint problem (Candace Makeda Moore, MD)
  • 2a34c51: massive lint issue (Candace Makeda Moore, MD)
  • 092b5b7: parenthesis lint (Candace Makeda Moore, MD)
  • d1bd90d: Add documentation to pipeline classes (Oleg Sivokon)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] over 4 years ago

CleanX - v0.1.8

Commits

  • 41d7d13: cleaning dicom dictionary (Candace Makeda Moore, MD)
  • 3acb63e: update paper title (Candace Makeda Moore, MD)
  • 41776cc: new names for pre-class (Candace Makeda Moore, MD)
  • 5593742: [fix] The bdist_wheel build used to throw away the contents of the package (Oleg Sivokon)
  • 8c5a030: [fix] lint (Candace Makeda Moore, MD)
  • ac20785: lint again (Candace Makeda Moore, MD)
  • 7a80f60: worflow update (Candace Makeda Moore, MD)
  • 55d9553: classes for dataframes (Candace Makeda Moore, MD)
  • f8833d0: linting new branch (Candace Makeda Moore, MD)
  • 8a223d3: relinting new branch (Candace Makeda Moore, MD)
  • 2e9a3f3: Sources for data import (Oleg Sivokon)
  • 1884fb0: class to see data (Candace Makeda Moore, MD)
  • 5beca66: [fix] PEP8 (Oleg Sivokon)
  • 70f136e: more classes (Candace Makeda Moore, MD)
  • 61bc323: adding classes (Candace Makeda Moore, MD)
  • c7ce1cf: relinting again (Candace Makeda Moore, MD)
  • 00a089a: double relint (Candace Makeda Moore, MD)
  • c24d309: third lint (Candace Makeda Moore, MD)
  • e2821ea: Example of generating report with output as Jupyter widget (Oleg Sivokon)
  • dc3c791: classless workflow (Candace Makeda Moore, MD)
  • 86e720e: start classy workflow demo (Candace Makeda Moore, MD)
  • b461919: fix NAN counting (Candace Makeda Moore, MD)
  • fe9a999: classes fix (Candace Makeda Moore, MD)
  • 4a77c19: linting (Candace Makeda Moore, MD)
  • 5b19f3c: relint (Candace Makeda Moore, MD)
  • c72848f: add text output (Candace Makeda Moore, MD)
  • 252c308: linting text function (Candace Makeda Moore, MD)
  • 634df1b: workflow (Candace Makeda Moore, MD)
  • 06b7d97: class workflow (Candace Makeda Moore, MD)
  • b0e8a73: readme update (Candace Makeda Moore, MD)
  • e985910: [wip] Command-line interface to cleanX (Oleg Sivokon) #18
  • 3b86604: Added a simple test for CLI DICOM reader (Oleg Sivokon) #18
  • e4a82f4: [fix] PEP8 (Oleg Sivokon) #18
  • dce86de: [fix] Missing cli package from requirements (Oleg Sivokon) #18
  • 1a039ae: Add optional dependencies in setup.py (Oleg Sivokon) #18
  • 13ee89d: Added CLI for datasets processing (Oleg Sivokon) #18
  • 9434dc3: Add a test for datasets CLI (Oleg Sivokon) #18

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] over 4 years ago

CleanX - v0.1.7

Commits

  • 9de4575: dicom explain link (Candace Makeda Moore, MD)
  • 7805840: more readme (Candace Makeda Moore, MD)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] over 4 years ago

CleanX - v0.1.6

Commits

  • 1b17492: Document PydicomDicomReader.read() (Oleg Sivokon)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] over 4 years ago

CleanX - v0.1.5

Commits

  • 0ba7cb0: fds (Candace Makeda Moore, MD)
  • dd69966: spell check readme (Candace Makeda Moore, MD)
  • 52d7070: documentation updates (Candace Makeda Moore, MD)
  • 5a45106: class documentation (Candace Makeda Moore, MD)
  • b818d95: image_work documentation (Candace Makeda Moore, MD)
  • 7041d28: [fix] Remove build artfiacts from CPython build (Oleg Sivokon)
  • 7802f23: [fix] We don't really need the egg to generate conda manifest (Oleg Sivokon)
  • f1c34ac: more documentation fixes (Candace Makeda Moore, MD)
  • 9435401: [fix] Always force uploading the release (Oleg Sivokon)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] over 4 years ago

CleanX - v0.1.3

Commits

  • 723590b: Installation instructions (Oleg Sivokon)
  • 782e965: [fix] master should be main (Oleg Sivokon)
  • 0ee0ca0: [fix] Apparently, GitHub does redirects when displaying sources (Oleg Sivokon)
  • 5672185: Build package for Python 3.7 and Python 3.8 (Oleg Sivokon)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] over 4 years ago

CleanX - v0.1.2

Commits

  • f68d8f4: replace jpg with [Jj][Pp][Gg] etc. (Candace Makeda Moore, MD)
  • 4998c9f: lint jpg[Jj][Pp][Gg] changes (Candace Makeda Moore, MD)
  • 952c514: lint jpg[Jj][Pp][Gg] changes again (Candace Makeda Moore, MD)
  • 2ec9c22: new normalizing for MRI images (Candace Makeda Moore, MD)
  • 8f7d76d: norm and normalizing for MRI images-documentation correction (Candace Makeda Moore, MD)
  • 02018b0: normalizing for MRI images-broken, remove (Candace Makeda Moore, MD)
  • b04df53: minor lint (Candace Makeda Moore, MD)
  • 2d66bd9: minor fix test (Candace Makeda Moore, MD)
  • a37dd2a: histogram based normalization function (Candace Makeda Moore, MD)
  • 1d76293: histogram based normalization function linted (Candace Makeda Moore, MD)
  • e98cbb7: better normalizing/rescaling function (Candace Makeda Moore, MD)
  • 1d915b2: better normalizing/rescaling function documentation (Candace Makeda Moore, MD)
  • f268719: whole folder normalizing/rescaling function (Candace Makeda Moore, MD)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] over 4 years ago

CleanX - v0.1.1

Commits

  • f1ccdfb: documentation addition (Candace Makeda Moore, MD)
  • 202b983: bug in findtinyimage_differences (Candace Makeda Moore, MD)
  • e5cb406: fix and add testing for findtinyimage_differences (Candace Makeda Moore, MD)
  • 6f12e8c: update workflow demo (Candace Makeda Moore, MD)
  • 1ddda43: new norming function and test (Candace Makeda Moore, MD)
  • 2d5cb22: new norming function and test linted (Candace Makeda Moore, MD)
  • 4b8cfa9: newer lint linted (Candace Makeda Moore, MD)
  • 913aa11: paper detail (Candace Makeda Moore, MD)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] over 4 years ago

CleanX - v0.1.0

Commits

  • [8d75278]: new workflow demo (Candace Makeda Moore, MD)
  • [a84e92d]: note on jpg ext (Candace Makeda Moore, MD)
  • [b449e4e]: newer workflow demo (Candace Makeda Moore, MD)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] almost 5 years ago

CleanX - v0.0.9

Commits

  • [909bcb2]: global bug fix for jpeg/jpg (Candace Makeda Moore, MD)
  • [9346ced]: global bug fix for jpeg/jpg try2 (Candace Makeda Moore, MD)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] almost 5 years ago

CleanX - v0.0.8

Commits

  • [4f84f8e]: note on anaconda (Candace Makeda Moore, MD)
  • [47b84e1]: a conda note (Candace Makeda Moore, MD)
  • [8dcbe33]: anaconda instructions (Candace Makeda Moore, MD)
  • [88aa134]: anaconda instructions+ (Candace Makeda Moore, MD)
  • [8eec820]: code of conduct file (Candace Makeda Moore, MD)
  • [c864d6b]: minor typo (Candace Makeda Moore, MD)
  • [b63eec4]: paper changes (Candace Makeda Moore, MD)
  • [dab1dd9]: paper changes+ (Candace Makeda Moore, MD)
  • [f7aac8e]: paper.bib changes (Candace Makeda Moore, MD)
  • [99a1b06]: paper.bib changes+ (Candace Makeda Moore, MD)
  • [b98e98e]: paper.bib changes++ (Candace Makeda Moore, MD)
  • [49ebc3a]: paper.bib changes+++ (Candace Makeda Moore, MD)
  • [f9d0f7d]: html mess (Candace Makeda Moore, MD)
  • [a02f0a0]: fds workflow badge (Candace Makeda Moore, MD)
  • [6f65a09]: ad (Candace Makeda Moore, MD)
  • [bb061b8]: ng ci buttons (Candace Makeda Moore, MD)
  • [a7259dd]: bage fix (Candace Makeda Moore, MD)
  • [5995b0f]: dge issue (Candace Makeda Moore, MD)
  • [3b04c10]: more bas (Candace Makeda Moore, MD)
  • [41965f6]: more badge mess (Candace Makeda Moore, MD)
  • [69a6a09]: more badge mess (Candace Makeda Moore, MD)
  • [d7ef106]: new badge mess (Candace Makeda Moore, MD)
  • [11b58c2]: new badge mess (Candace Makeda Moore, MD)
  • [08c8cc2]: again badge mess (Candace Makeda Moore, MD)
  • [e48cb95]: again badge mess+ (Candace Makeda Moore, MD)
  • [c2bb47f]: again badge mess++ (Candace Makeda Moore, MD)
  • [7871a22]: function for line count (Candace Makeda Moore, MD)
  • [39e0ed5]: function for line count+ (Candace Makeda Moore, MD)
  • [df8ba7d]: new test function (Candace Makeda Moore, MD)
  • [6bdf973]: new test function docu (Candace Makeda Moore, MD)
  • [92a03c8]: add contributing (Candace Makeda Moore, MD)
  • [8f411e0]: add contributing+ (Candace Makeda Moore, MD)
  • [53d50d8]: Update issue templates (Candace Makeda Moore, MD)
  • [0faf9b7]: adding to bib data (Candace Makeda Moore, MD)
  • [9fb3c5d]: affiliation for oleg (Candace Makeda Moore, MD)
  • [9464d22]: fix oleg affiliation in paper (Candace Makeda Moore, MD)
  • [88e5b9c]: fix oleg affiliation in paper (Candace Makeda Moore, MD)
  • [1061fc2]: fixing all "legnth" even in variables (Candace Makeda Moore, MD)
  • [1b36702]: cleaning readme file (Candace Makeda Moore, MD)
  • [8973981]: the format of readme (Candace Makeda Moore, MD)
  • [01ceaad]: adding rotator class (Candace Makeda Moore, MD)
  • [ed5ca4f]: add simple spinning template function (Candace Makeda Moore, MD)
  • [8b8948f]: adding testing for simplespinningtemplate function (Candace Makeda Moore, MD)
  • [2610fa8]: adding testing for simplespinningtemplate function typo fix (Candace Makeda Moore, MD)
  • [0339e52]: new function for contour image (Candace Makeda Moore, MD)
  • [d3b4e82]: [fix] Some typos and formatting (Oleg Sivokon)
  • [494d13c]: update affiliations of cmhm (Candace Makeda Moore, MD)
  • [20b6c27]: q adding to documentation (Candace Makeda Moore, MD)
  • [ae9380b]: [fix] Formatting of code examples (Oleg Sivokon)
  • [3c9fa58]: Clean up imports (Oleg Sivokon)
  • [31dbf6e]: [fix] Align casing of all appearences of "DataFrame" (Oleg Sivokon)
  • [3f3bc41]: [fix] Format DataFrame according to placement (Oleg Sivokon)
  • [8094c16]: [fix] PEP8 (Oleg Sivokon)
  • [5284dd6]: avgimgmaker (Candace Makeda Moore, MD)
  • [853dece]: tested and tests for imgavg function (Candace Makeda Moore, MD)
  • [f1e7dcd]: only lists (Candace Makeda Moore, MD)
  • [a16bfa5]: new image variability function (Candace Makeda Moore, MD)
  • [ff8bf48]: documentation fix (Candace Makeda Moore, MD)
  • [acf6fa4]: minor lint (Candace Makeda Moore, MD)
  • [2323b8c]: new function (Candace Makeda Moore, MD)
  • [f35d414]: new function, linted' (Candace Makeda Moore, MD)
  • [56086de]: trying to add workflow demo (Candace Makeda Moore, MD)
  • [7aacccc]: workflow demo start (Candace Makeda Moore, MD)
  • [cb545a5]: fix indent in dimensions to df function (Candace Makeda Moore, MD)
  • [e0ffc12]: fix indent bug and jpeg bug in two functions (Candace Makeda Moore, MD)
  • [b722426]: lint fix (Candace Makeda Moore, MD)
  • [70c67c2]: bug fix (Candace Makeda Moore, MD)
  • [069a0c5]: bug fix augment and move (Candace Makeda Moore, MD)
  • [041804f]: workflow demo update (Candace Makeda Moore, MD)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] almost 5 years ago

CleanX - v0.0.7

Commits

  • [e239606]: Print the error on trying to find latest tag (Candace Makeda Moore, MD)
  • [5ce2dd5]: Maybe we need to install Sphinx this way... (Candace Makeda Moore, MD)
  • [1bf220f]: CI for some reason decided not to fetch tags, lets see if this helps (Candace Makeda Moore, MD)
  • [7275441]: Need to do the same for tags (Candace Makeda Moore, MD)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by github-actions[bot] almost 5 years ago

CleanX - Beta Squared

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by drcandacemakedamoore almost 5 years ago

CleanX - Zenodo frozen version

Special Zenodo release of Xray dataset cleaning code.

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by drcandacemakedamoore almost 5 years ago

CleanX - Beta +

A brave new world of radiology X-ray dataset cleaning.

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by drcandacemakedamoore almost 5 years ago

CleanX - First release (beta)

Scientific Software - Peer-reviewed - Jupyter Notebook
Published by drcandacemakedamoore almost 5 years ago