Data

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Indexes

Applications

Experiments

Open Source Science

https://github.com/bhklab/skinfibrosis

Skin Fibrosis

https://github.com/bhklab/skinfibrosis

Science Score: 23.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 2 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.4%) to scientific vocabulary

Keywords

analysis
Last synced: 5 months ago · JSON representation

Repository

Skin Fibrosis

Basic Info
  • Host: GitHub
  • Owner: bhklab
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 66.6 MB
Statistics
  • Stars: 0
  • Watchers: 3
  • Forks: 1
  • Open Issues: 1
  • Releases: 0
Topics
analysis
Created about 9 years ago · Last pushed almost 6 years ago
Metadata Files
Readme

README.md

Files to run the scripts

  • CMAP perturbation object:

Run the R scripts

  • Fig1a-humanHeatmap.R
  • Fig1b-temporalDataClustering&Overrep.R
  • Fig2a-PharmaCogenomics.R
  • Fig1d-clustering.R

Set up the software environment

``` R version 3.2.3 (2015-12-10) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.9.5 (Mavericks)

locale: [1] enCA.UTF-8/enCA.UTF-8/enCA.UTF-8/C/enCA.UTF-8/en_CA.UTF-8

attached base packages: [1] stats graphics grDevices utils datasets methods base

other attached packages: [1] PharmacoGx_1.1.6

loaded via a namespace (and not attached): [1] igraph1.0.1 cluster2.0.4 magrittr1.5 BiocGenerics0.14.0 maps3.1.1 MASS7.3-45 caTools1.17.1 tools3.2.3
[9] magicaxis2.0.0 parallel3.2.3 Biobase2.28.0 piano1.8.2 plotrix3.6-3 KernSmooth2.23-15 marray1.46.0 gtools3.5.0
[17] celestial1.3 digest0.6.10 lsa0.73.1 RColorBrewer1.1-2 mapproj1.2-4 sets1.0-16 SnowballC0.5.1 bitops1.0-6
[25] slam0.1-32 sm2.2-5.4 limma3.24.15 gdata2.17.0 downloader0.4 relations0.6-6 gplots3.0.1 RANN2.5
```

Owner

  • Name: BHKLAB
  • Login: bhklab
  • Kind: organization
  • Location: Toronto, Ontario, Canada

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre

GitHub Events

Total
Last Year

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 39
  • Total Committers: 2
  • Avg Commits per committer: 19.5
  • Development Distribution Score (DDS): 0.051
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
lsgh l****g@u****a 37
Benjamin Haibe-Kains b****a@g****m 2
Committer Domains (Top 20 + Academic)
uwaterloo.ca: 1

Issues and Pull Requests

Last synced: 9 months ago

All Time
  • Total issues: 1
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • Ranxinx (1)
Pull Request Authors
Top Labels
Issue Labels
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