https://github.com/bhklab/mycg9a
Science Score: 13.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
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○DOI references
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○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.3%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: bhklab
- Language: R
- Default Branch: master
- Size: 14.6 MB
Statistics
- Stars: 0
- Watchers: 3
- Forks: 1
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
MYCG9a
Introduction
This is a project to regenerate the pharmacogenomics analysis in this paper:
MYC Interacts with the G9a Histone Methyltransferase to Drive Transcriptional Repression and Tumorigenesis. Tu WB, Shiah YJ, Lourenco C, Mullen PJ, Dingar D, Redel C, Tamachi A, Ba-Alawi W, Aman A, Al-Awar R, Cescon DW, Haibe-Kains B, Arrowsmith CH, Raught B, Boutros PC, Penn LZ. Cancer Cell. 2018 Oct 8.
The script for the analysis is written in R.
Dependencies:
These R packages need to be installed in order to run the analysis script: - Biobase - PharmacoGx - scales - piano - GSA
Reproducibility of the Analysis:
- Once the project is downloaded to the user computer, the user needs to navigate to the main directory of the project "MYCG9a-master".
- Inside the main directory, there is an R script file named "ScriptMYCG9aFigurespharmacogenomics.R". Running this script will regenerate the full pharmacogenomics analysis related to associating g9a inhibitor response with MYC regulation signatures in this paper.
Important Note: the user needs to set the working directory inside the script file before running it, i.e. setting the working directory to "MYCG9a-master"
Owner
- Name: BHKLAB
- Login: bhklab
- Kind: organization
- Location: Toronto, Ontario, Canada
- Website: http://www.pmgenomics.ca/bhklab/
- Repositories: 168
- Profile: https://github.com/bhklab
The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
GitHub Events
Total
Last Year
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Wail Ba alawi | b****i@g****m | 4 |
| Benjamin Haibe-Kains | b****a@g****m | 2 |
Issues and Pull Requests
Last synced: about 1 year ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0