https://github.com/bhklab/genefu
R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 22 committers (9.1%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.9%) to scientific vocabulary
Keywords from Contributors
Repository
R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.
Statistics
- Stars: 25
- Watchers: 25
- Forks: 13
- Open Issues: 7
- Releases: 0
Metadata Files
README.md
Bioc-Release: 
Bioc-Devel: 
geneFu: R package providing various functions relevant for gene expression analysis with emphasis on breast and ovarian cancers.
Version 2 This version includes major updates of gene expression signatures, subtype classification methods, and prognostic signature predictors. Some updates include the addition of recent gene signatures (now includes adding Crins and Yoshihara signatures for ovarian cancer), updates to PAM50 subtype probabilities classification and rorS functions, and addition of the IntClust and AIMS subtyping and Claudin-Low subtyping schemes for breast cancer.
Owner
- Name: BHKLAB
- Login: bhklab
- Kind: organization
- Location: Toronto, Ontario, Canada
- Website: http://www.pmgenomics.ca/bhklab/
- Repositories: 168
- Profile: https://github.com/bhklab
The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
GitHub Events
Total
- Issues event: 2
- Watch event: 1
- Member event: 1
- Issue comment event: 2
- Push event: 2
- Fork event: 1
- Create event: 1
Last Year
- Issues event: 2
- Watch event: 1
- Member event: 1
- Issue comment event: 2
- Push event: 2
- Fork event: 1
- Create event: 1
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| DGendoo | d****4@g****m | 50 |
| Markus Schroeder | m****d@j****u | 41 |
| Benjamin Haibe-Kains | b****a@i****a | 32 |
| ChristopherEeles | c****s@o****m | 31 |
| Dan Tenenbaum | d****a@f****g | 29 |
| Benjamin Haibe-Kains | b****a@j****u | 24 |
| Christopher Eeles | 4****s | 20 |
| Deena | D****o | 12 |
| Nitesh Turaga | n****a@g****m | 10 |
| Benjamin Haibe-Kains | b****a@g****m | 8 |
| Markus Schroeder | m****d@m****) | 7 |
| Herve Pages | h****s@f****g | 5 |
| kofiav | v****a@g****m | 2 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| Hervé Pagès | h****s@f****g | 2 |
| gangeshberiuhn | g****i@u****a | 1 |
| Benjamin Haibe-Kains | 1 | |
| unknown | n****i@g****m | 1 |
| Chao-Jen Wong | c****2@f****g | 1 |
| LiNk-NY | m****9@g****m | 1 |
| gangeshberiuhn | 4****n | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 28
- Total pull requests: 6
- Average time to close issues: about 2 years
- Average time to close pull requests: 5 months
- Total issue authors: 25
- Total pull request authors: 4
- Average comments per issue: 2.75
- Average comments per pull request: 0.83
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- DGendoo (3)
- elicabe (2)
- ksaunders73 (1)
- maringa780 (1)
- demis001 (1)
- jakalssj3 (1)
- BairdMcI (1)
- PedroMilanezAlmeida (1)
- bhaibeka (1)
- TrofimovAssya (1)
- calisirkubra (1)
- martinguerrero89 (1)
- ferenckata (1)
- marcellosalvi (1)
- zenglongjin (1)
Pull Request Authors
- DGendoo (3)
- ChristopherEeles (1)
- paulbarber (1)
- Livia-Rasp (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- AIMS * depends
- R >= 4.1 depends
- biomaRt * depends
- iC10 * depends
- survcomp * depends
- amap * imports
- graphics * imports
- impute * imports
- limma * imports
- mclust * imports
- stats * imports
- utils * imports
- Biobase * suggests
- BiocStyle * suggests
- GeneMeta * suggests
- breastCancerMAINZ * suggests
- breastCancerNKI * suggests
- breastCancerTRANSBIG * suggests
- breastCancerUNT * suggests
- breastCancerUPP * suggests
- breastCancerVDX * suggests
- caret * suggests
- knitr * suggests
- magick * suggests
- rmarkdown * suggests
- rmeta * suggests
- survival * suggests
- xtable * suggests
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/upload-artifact main composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite