Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/bhklab/synergxdb

SYNERGxDB is a comprehensive database to explore synergistic drug combinations for biomarker discovery.

https://github.com/bhklab/synergxdb

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.1%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

SYNERGxDB is a comprehensive database to explore synergistic drug combinations for biomarker discovery.

Basic Info
  • Host: GitHub
  • Owner: bhklab
  • Language: JavaScript
  • Default Branch: master
  • Homepage: http://synergxdb.ca/
  • Size: 319 MB
Statistics
  • Stars: 1
  • Watchers: 2
  • Forks: 1
  • Open Issues: 2
  • Releases: 0
Created about 7 years ago · Last pushed over 1 year ago
Metadata Files
Readme

README.md

SYNERGxDB Web App

Setup Instructions

  • Fork and clone this repo

git clone git@github.com/{yourUsername}/SYNERGxDB/.git cd SYNERGxDB

  • Create .env using .env.example as a reference to access the database

  • Install all server dependencies npm i

  • Start the server by running npm start or npm run devstart(development mode) command

  • Install all client dependencies cd client && npm i

  • Start the client (development mode) by running npm start

  • Open http://localhost:3000 to view it in the browser.

Build Instructions

  • Go into clients directory cd client

  • To build React app for production use npm run build command

Dependencies

  • React
  • Styled-Components
  • Styled-Normalize
  • Plotly.js
  • React-Dom
  • React-Router
  • React-plotly.js
  • React-window
  • Express
  • Knex
  • Dotenv
  • Body-parser

Dev Dependenices

  • Nodemon
  • Eslint

Servers

Database

A MySQL dump of pharmacological and molecular profiles of SYNERGxDB is available on Zenodo.

Owner

  • Name: BHKLAB
  • Login: bhklab
  • Kind: organization
  • Location: Toronto, Ontario, Canada

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre

GitHub Events

Total
  • Push event: 1
Last Year
  • Push event: 1

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 2
  • Total pull requests: 20
  • Average time to close issues: N/A
  • Average time to close pull requests: 5 minutes
  • Total issue authors: 1
  • Total pull request authors: 3
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 20
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: less than a minute
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • anniejs02 (2)
Pull Request Authors
  • deventorum (18)
  • tweiliu168 (1)
  • ChristopherEeles (1)
Top Labels
Issue Labels
Pull Request Labels