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https://github.com/bhklab/hnscc_clinical_data_handling

Preprocessing the clinical data from the HNSCC dataset on TCIA

https://github.com/bhklab/hnscc_clinical_data_handling

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
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    DOI references
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    Academic publication links
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.6%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Preprocessing the clinical data from the HNSCC dataset on TCIA

Basic Info
  • Host: GitHub
  • Owner: bhklab
  • Language: Jupyter Notebook
  • Default Branch: main
  • Homepage:
  • Size: 149 KB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Created almost 2 years ago · Last pushed over 1 year ago
Metadata Files
Readme

README.md

Clinical Data Handling

This repository contains the code and data for preprocessing the clinical data from the HNSCC dataset on TCIA.

To Run

  1. Install pixi: https://pixi.sh/dev/#installation

  2. Activate the pixi environment: shell $ pixi shell

  3. Open workflow/scripts/clinical_data_handling.ipynb in a Jupyter notebook.

  4. Select default kernel and run the notebook.

Owner

  • Name: BHKLAB
  • Login: bhklab
  • Kind: organization
  • Location: Toronto, Ontario, Canada

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre

GitHub Events

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  • Member event: 2
Last Year
  • Member event: 2

Issues and Pull Requests

Last synced: over 1 year ago

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  • Total pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: about 1 hour
  • Total issue authors: 0
  • Total pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 1
  • Average time to close issues: N/A
  • Average time to close pull requests: about 1 hour
  • Issue authors: 0
  • Pull request authors: 1
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
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  • jjjermiah (1)
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