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paperfetcher

Pip-installable Python package to automate handsearching and citation searching for systematic reviews.

https://github.com/paperfetcher/paperfetcher

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.7%) to scientific vocabulary

Keywords

automation data-retrieval meta-analysis systematic-review
Last synced: 6 months ago · JSON representation ·

Repository

Pip-installable Python package to automate handsearching and citation searching for systematic reviews.

Basic Info
Statistics
  • Stars: 14
  • Watchers: 3
  • Forks: 2
  • Open Issues: 5
  • Releases: 5
Topics
automation data-retrieval meta-analysis systematic-review
Created over 4 years ago · Last pushed over 1 year ago
Metadata Files
Readme License Citation

README.md

paperfetcher

PyPI version fury.io Build Status Website GitHub license Open Issues

About

Paperfetcher is a Python package to automate handsearching and citation searching (snowballing) for systematic reviews. Paperfetcher works with Python 3.7+.

To learn more about Paperfetcher, visit paperfetcher.github.io.

Usage

To get started, browse the following Getting Started Jupyter notebooks (also in the examples/ directory in this repository):

  1. Getting started with handsearching
  2. Getting started with citation searching

Once you understand the workflow, read the Module Documentation to learn more about paperfetcher's various modules, classes and functions.

Installation

Installation with pip

  1. Install pip
  2. Install paperfetcher using pip: sh pip install paperfetcher

Installation from source

  1. Clone this repository
  2. In the repository directory, run sh python setup.py install or, if you have pip installed sh pip install .

Running tests (if installed from source)

You can run tests to make sure that paperfetcher is working correctly on your system.

  1. To run integration tests, in the repository directory, run sh cd tests/tests_integration pytest

  2. To run unit tests, in the repository directory, run sh cd tests/tests_unit pytest

The Team

Paperfetcher was developed by Akash Pallath at the University of Pennsylvania and Qiyang Zhang at the Johns Hopkins University.

Owner

  • Name: paperfetcher
  • Login: paperfetcher
  • Kind: organization

Paperfetcher accelerates literature search for your systematic reviews.

Citation (CITATION.cff) 

authors:
  - family-names: Pallath
    given-names: Akash
  - family-names: Zhang
    given-names: Qiyang
cff-version: 1.2.0
message: "If you use this software, please cite both the article from preferred-citation and the software itself."
preferred-citation:
  authors:
    - family-names: Pallath
      given-names: Akash
    - family-names: Zhang
      given-names: Qiyang
  title: "Paperfetcher: A tool to automate handsearch for systematic reviews"
  type: article
  url: "https://arxiv.org/abs/2110.12490"
title: "Paperfetcher"

GitHub Events

Total
  • Watch event: 5
Last Year
  • Watch event: 5

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 67
  • Total Committers: 1
  • Avg Commits per committer: 67.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Akash Pallath p****h@g****m 67

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 15
  • Total pull requests: 0
  • Average time to close issues: about 1 month
  • Average time to close pull requests: N/A
  • Total issue authors: 3
  • Total pull request authors: 0
  • Average comments per issue: 1.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • apallath (13)
  • nealhaddaway (1)
  • markhvan (1)
Pull Request Authors
Top Labels
Issue Labels
enhancement (4) bug (3) CI (2)
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 63 last-month
  • Total docker downloads: 100
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 7
  • Total maintainers: 1
pypi.org: paperfetcher

Python package to mine papers for systematic reviews.

  • Versions: 7
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 63 Last month
  • Docker Downloads: 100
Rankings
Docker downloads count: 3.1%
Dependent packages count: 10.1%
Stargazers count: 17.7%
Forks count: 19.2%
Average: 20.2%
Dependent repos count: 21.6%
Downloads: 49.5%
Maintainers (1)
apallath
Last synced: 7 months ago

Dependencies

setup.py pypi
  • openpyxl *
  • pandas *
  • pytest *
  • requests *
  • rispy *
  • stqdm *
  • tqdm *
.github/workflows/build_test.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v2 composite