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Open Source Science

https://github.com/biapol/napari-crop

https://github.com/biapol/napari-crop

Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ○
    codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.6%) to scientific vocabulary

Keywords

napari-plugin package software

Keywords from Contributors

napari
Last synced: 5 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: BiAPoL
  • License: bsd-3-clause
  • Language: Jupyter Notebook
  • Default Branch: main
  • Homepage:
  • Size: 34.1 MB
Statistics
  • Stars: 10
  • Watchers: 4
  • Forks: 4
  • Open Issues: 18
  • Releases: 10
Topics
napari-plugin package software
Created over 4 years ago · Last pushed 11 months ago
Metadata Files
Readme License

README.md

napari-crop

License PyPI Python Version tests codecov DOI

Currently, this repository is not guaranteed to be actively maintained.

If you are interested in further developing it, feel free to fork it.

Crop regions in napari manually

Crop in any dimension

Cut a volume using a plane

Note:

- this functionality currently only works with 3D data

- to drag the plane, hold the 'SHIFT' key from your keyboard

Usage

Create a new shapes layer to annotate the region you would like to crop:

Use the rectangle tool to annotate a region. Start the crop tool from the Tools > Utilities > Crop region menu. Click the Run button to crop the region.

You can also use the Select shapes tool to move the rectangle to a new place and crop another region by clicking on Run.

Hint: You can also use the napari-tabu plugin to send all your cropped images to a new napari window.

This napari plugin was generated with Cookiecutter using with @napari's cookiecutter-napari-plugin template.

Installation

You can install napari-crop via pip:

pip install napari-crop

Contributing

Contributions are very welcome.

License

Distributed under the terms of the BSD-3 license, "napari-crop" is free and open source software

Issues

If you encounter any problems, please create a thread on image.sc along with a detailed description and tag @haesleinhuepf.

Owner

  • Name: Bio-image Analysis group at the DFG Cluster of Excellence "Physics of Life" at TU Dresden
  • Login: BiAPoL
  • Kind: organization
  • Location: Dresden

GitHub Events

Total
  • Watch event: 3
  • Push event: 3
Last Year
  • Watch event: 3
  • Push event: 3

Committers

Last synced: almost 3 years ago

All Time
  • Total Commits: 66
  • Total Committers: 4
  • Avg Commits per committer: 16.5
  • Development Distribution Score (DDS): 0.606
Past Year
  • Commits: 12
  • Committers: 2
  • Avg Commits per committer: 6.0
  • Development Distribution Score (DDS): 0.167
Top Committers
Name Email Commits
Tim Morello t****o@g****m 26
Robert Haase h****f@u****m 20
Marcelo Zoccoler m****c@g****m 18
Johannes Müller 3****r@u****m 2

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 27
  • Total pull requests: 27
  • Average time to close issues: about 2 months
  • Average time to close pull requests: 26 days
  • Total issue authors: 9
  • Total pull request authors: 4
  • Average comments per issue: 1.41
  • Average comments per pull request: 2.07
  • Merged pull requests: 18
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • zoccoler (10)
  • tdmorello (6)
  • haesleinhuepf (4)
  • VolkerH (2)
  • MosGeo (1)
  • jo-mueller (1)
  • andreasmarnold (1)
  • macromeer (1)
  • perdigao1 (1)
Pull Request Authors
  • zoccoler (13)
  • jo-mueller (5)
  • tdmorello (5)
  • haesleinhuepf (3)
Top Labels
Issue Labels
enhancement (4) bug (3) installation (1)
Pull Request Labels
bug (1) enhancement (1)

Packages

  • Total packages: 2
  • Total downloads:
    • pypi 161 last-month
  • Total dependent packages: 2
    (may contain duplicates)
  • Total dependent repositories: 1
    (may contain duplicates)
  • Total versions: 12
  • Total maintainers: 2
pypi.org: napari-crop

Crop regions in napari manually

  • Versions: 10
  • Dependent Packages: 1
  • Dependent Repositories: 1
  • Downloads: 161 Last month
Rankings
Dependent packages count: 4.8%
Downloads: 11.0%
Average: 15.2%
Forks count: 19.2%
Stargazers count: 19.4%
Dependent repos count: 21.6%
Maintainers (2)
haesleinhuepf zoccoler
Last synced: 6 months ago
conda-forge.org: napari-crop
  • Versions: 2
  • Dependent Packages: 1
  • Dependent Repositories: 0
Rankings
Dependent packages count: 28.8%
Dependent repos count: 34.0%
Average: 44.0%
Stargazers count: 55.7%
Forks count: 57.4%
Last synced: 7 months ago

Dependencies

.github/workflows/test_and_deploy.yml actions
  • GabrielBB/xvfb-action v1 composite
  • actions/checkout v2 composite
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
  • actions/setup-python v2 composite
  • codecov/codecov-action v2 composite
  • tlambert03/setup-qt-libs v1 composite
requirements.txt pypi
setup.py pypi