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Recent Releases of https://github.com/bigbio/sdrf-pipelines

https://github.com/bigbio/sdrf-pipelines - v0.0.32

What's Changed

  • ignore case in original extension by @daichengxin in https://github.com/bigbio/sdrf-pipelines/pull/183
  • :art: applymap depreceated since pandas 2.1 by @enryH in https://github.com/bigbio/sdrf-pipelines/pull/186
  • Conda build maintenance by @fabianegli in https://github.com/bigbio/sdrf-pipelines/pull/188
  • Add version number consistency check for conda recipe by @fabianegli in https://github.com/bigbio/sdrf-pipelines/pull/189
  • support TMT18plex by @daichengxin in https://github.com/bigbio/sdrf-pipelines/pull/192
  • Tolerence_handling by @enryH in https://github.com/bigbio/sdrf-pipelines/pull/195
  • update dev branch by @ypriverol in https://github.com/bigbio/sdrf-pipelines/pull/199
  • Add conda recipe improvements to dev branch by @fabianegli in https://github.com/bigbio/sdrf-pipelines/pull/202
  • Prominently display the SDRF validation capability in the README.md by @fabianegli in https://github.com/bigbio/sdrf-pipelines/pull/204
  • Dev by @ypriverol in https://github.com/bigbio/sdrf-pipelines/pull/200
  • TMTplex inference fix release by @fabianegli in https://github.com/bigbio/sdrf-pipelines/pull/220
  • fix label set inference in writeTwoTableExperimentalDesign by @fabianegli in https://github.com/bigbio/sdrf-pipelines/pull/222

New Contributors

  • @enryH made their first contribution in https://github.com/bigbio/sdrf-pipelines/pull/186

Full Changelog: https://github.com/bigbio/sdrf-pipelines/compare/v0.0.31...v0.0.32

- Python
Published by ypriverol 9 months ago

https://github.com/bigbio/sdrf-pipelines - v0.0.31

What's Changed

  • Add setuptools dependency by @levitsky in https://github.com/bigbio/sdrf-pipelines/pull/179
  • Fix ValueError on enzyme validation by @levitsky in https://github.com/bigbio/sdrf-pipelines/pull/178
  • Version increased for release by @ypriverol in https://github.com/bigbio/sdrf-pipelines/pull/181
  • Fix column order validation by @levitsky in https://github.com/bigbio/sdrf-pipelines/pull/182

Full Changelog: https://github.com/bigbio/sdrf-pipelines/compare/v0.0.30...v0.0.31

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/sdrf-pipelines - v0.0.30

What's Changed

  • small update in the cache ontologies and update in all of them by @ypriverol in https://github.com/bigbio/sdrf-pipelines/pull/174

Full Changelog: https://github.com/bigbio/sdrf-pipelines/compare/v0.0.29...v0.0.30

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/sdrf-pipelines - v0.0.29

What's Changed

  • Skip OLS internet check, use instead local parquet files by @ypriverol in https://github.com/bigbio/sdrf-pipelines/pull/171: This PR includes a new option --use_ols_cache_only that disables the use of OLS service (internet check); instead, it uses the parquet local files.

Full Changelog: https://github.com/bigbio/sdrf-pipelines/compare/v0.0.28...v0.0.29

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/sdrf-pipelines - v0.0.28

What's Changed

  • Big PR with multiple validations - [DO NOT MERGE YET] by @ypriverol in https://github.com/bigbio/sdrf-pipelines/pull/169
  • Change the logic of validation, by default, everything is validated, and three variables are now introduced to skip some of the validations: --skip_ms_validation, --skip_factor_validation, --skip_experimental_design_validation

Full Changelog: https://github.com/bigbio/sdrf-pipelines/compare/v0.0.27...v0.0.28

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/sdrf-pipelines - Release v0.0.27

What's Changed

  • OLS refactoring. by @ypriverol in https://github.com/bigbio/sdrf-pipelines/pull/168
    • Check if the OLS is running.
    • Check if the given ontology, for example PSI-MS, is available.
    • All tests related with the OLSClient are updated.
    • Conda build tested.

Full Changelog: https://github.com/bigbio/sdrf-pipelines/compare/v0.0.26...v0.0.27

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.26

What's Changed

  • Update openms.py by @ypriverol in https://github.com/bigbio/sdrf-pipelines/pull/165

Full Changelog: https://github.com/bigbio/sdrf-pipelines/compare/v0.0.25...v0.0.26

- Python
Published by ypriverol almost 2 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.25

What's Changed

  • PLEASE DO NOT MERGE Fix minor issues for the terms validation by @ypriverol in https://github.com/bigbio/sdrf-pipelines/pull/150
  • Major changes and bug fixing by @ypriverol in https://github.com/bigbio/sdrf-pipelines/pull/162
  • small changes related with OLS. by @ypriverol in https://github.com/bigbio/sdrf-pipelines/pull/163

Full Changelog: https://github.com/bigbio/sdrf-pipelines/compare/v0.0.24...v0.0.25

- Python
Published by ypriverol almost 2 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.24

What's Changed

  • Refactor testing by @jspaezp in https://github.com/bigbio/sdrf-pipelines/pull/149

New Contributors

  • @jspaezp made their first contribution in https://github.com/bigbio/sdrf-pipelines/pull/149

Full Changelog: https://github.com/bigbio/sdrf-pipelines/compare/v0.0.23...v0.0.24

- Python
Published by ypriverol over 2 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.23

What's Changed

  • Flexible key-value pair location by @WangHong007 in https://github.com/bigbio/sdrf-pipelines/pull/142
  • Fix if-else branch in column name validation by @lazear in https://github.com/bigbio/sdrf-pipelines/pull/143
  • Check to see if key is present and values are set by @lazear in https://github.com/bigbio/sdrf-pipelines/pull/144
  • Fixed some errors introduced before in #PR 44 by @ypriverol in https://github.com/bigbio/sdrf-pipelines/pull/146
  • Conversion bruker data by @ypriverol in https://github.com/bigbio/sdrf-pipelines/pull/148

New Contributors

  • @WangHong007 made their first contribution in https://github.com/bigbio/sdrf-pipelines/pull/142
  • @lazear made their first contribution in https://github.com/bigbio/sdrf-pipelines/pull/143

Full Changelog: https://github.com/bigbio/sdrf-pipelines/compare/v0.0.22...v0.0.23

- Python
Published by ypriverol over 2 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.22

- Python
Published by ypriverol about 3 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.21

- Python
Published by ypriverol almost 4 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.20

- Python
Published by ypriverol about 4 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.19

- Python
Published by ypriverol about 4 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.18

- Python
Published by ypriverol over 4 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.17

- Python
Published by ypriverol over 4 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.14

- Python
Published by ypriverol almost 5 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.13

- Python
Published by ypriverol about 5 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.12

- Python
Published by ypriverol about 5 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.11

- Python
Published by ypriverol about 5 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.10

- Python
Published by ypriverol about 5 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.9

- Python
Published by ypriverol over 5 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.8

- Python
Published by ypriverol over 5 years ago

https://github.com/bigbio/sdrf-pipelines - Prerelease v0.0.7

- Python
Published by ypriverol over 5 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.6

- Python
Published by ypriverol over 5 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.5

Beta release version 0.0.5

- Python
Published by ypriverol almost 6 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.4

Prelease

- Python
Published by ypriverol almost 6 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.3

- Python
Published by ypriverol almost 6 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release v0.0.2

- Python
Published by ypriverol almost 6 years ago

https://github.com/bigbio/sdrf-pipelines - Pre-release

- Python
Published by ypriverol almost 6 years ago