https://github.com/bigbio/quantms-rescoring - v0.0.10

What's Changed

• increase version 0.0.9 -> 0.0.10 by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/29
• --findbestmodel parameter added. Full Changelog: https://github.com/bigbio/quantms-rescoring/compare/v0.0.9...v0.0.10

- Python
Published by ypriverol about 1 year ago

https://github.com/bigbio/quantms-rescoring - v0.0.9

What's Changed

• fixed scan number parser by @daichengxin in https://github.com/bigbio/quantms-rescoring/pull/27
• Dev by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/28

Full Changelog: https://github.com/bigbio/quantms-rescoring/compare/v0.0.8...v0.0.9

- Python
Published by ypriverol about 1 year ago

https://github.com/bigbio/quantms-rescoring - v0.0.8

What's Changed

• add force and default skip failed MS2PIP by @daichengxin in https://github.com/bigbio/quantms-rescoring/pull/21
• Dev by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/22
• fixed by @daichengxin in https://github.com/bigbio/quantms-rescoring/pull/23
• Dev by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/24
• Update test_commands.py by @daichengxin in https://github.com/bigbio/quantms-rescoring/pull/25
• Dev by @daichengxin in https://github.com/bigbio/quantms-rescoring/pull/26

Full Changelog: https://github.com/bigbio/quantms-rescoring/compare/v0.0.7...v0.0.8

- Python
Published by ypriverol about 1 year ago

https://github.com/bigbio/quantms-rescoring - v0.0.7

What's Changed

• Improve logging
• multithreads
• remove decoy flags
• default similarity threshold from 0.8 -> 0.7

by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/20

Full Changelog: https://github.com/bigbio/quantms-rescoring/compare/v0.0.6...v0.0.7

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-rescoring - v0.0.6

What's Changed

• Removed parameter score direction and obtain it from idXML by @daichengxin in https://github.com/bigbio/quantms-rescoring/pull/17
• removed printed pyopenms warning by @daichengxin in https://github.com/bigbio/quantms-rescoring/pull/19
• major patch for ms2pip to use pyopenms instad of ms2rescore-rs by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/18

Full Changelog: https://github.com/bigbio/quantms-rescoring/compare/v0.0.5...v0.0.6

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-rescoring - v0.0.5

What's Changed

• [PLEASE DO NOT MERGE] Major changes in the ms2rescore by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/10
• update test by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/11
• Dev by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/12
• Dev by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/13
• fixing pyopenms were retrieving dissociation matrices by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/14
• Enhance mzML Handling: Unix Compatibility Checks, Theoretical Spectra, MS2PIP Improvements & Coverage Reporting by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/15
• improve in converting ppm errors to Da tolerances. by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/16

Full Changelog: https://github.com/bigbio/quantms-rescoring/compare/v0.0.4...v0.0.5

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-rescoring - v0.0.4

What's Changed

• fixed empty spectra bugs by @daichengxin in https://github.com/bigbio/quantms-rescoring/pull/8
• Bug fixing by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/9

Full Changelog: https://github.com/bigbio/quantms-rescoring/compare/v0.0.3...v0.0.4

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-rescoring - v0.0.3

What's Changed

• fixed bugs by @daichengxin in https://github.com/bigbio/quantms-rescoring/pull/5
• fixed bugs for invalid psm by @daichengxin in https://github.com/bigbio/quantms-rescoring/pull/6
• major changes about PSMs bugs. by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/7

New Contributors

• @daichengxin made their first contribution in https://github.com/bigbio/quantms-rescoring/pull/5

Full Changelog: https://github.com/bigbio/quantms-rescoring/compare/v0.0.2...v0.0.3

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-rescoring - v0.0.2

What's Changed

• Dev by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/4
• ms2rescore psms index fixed issues https://github.com/bigbio/quantms/issues/458

Full Changelog: https://github.com/bigbio/quantms-rescoring/compare/v0.0.1...v0.0.2

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-rescoring - v0.0.1

What's Changed

• second biggest commit. by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/1
• Minor changes. by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/2
• remove pyarrow by @ypriverol in https://github.com/bigbio/quantms-rescoring/pull/3

New Contributors

• @ypriverol made their first contribution in https://github.com/bigbio/quantms-rescoring/pull/1

Full Changelog: https://github.com/bigbio/quantms-rescoring/commits/v0.0.1

- Python
Published by ypriverol over 1 year ago