https://github.com/bigbio/quantms-utils - v0.0.21

What's Changed

• support DIA-NN 2.1.0 by @daichengxin in https://github.com/bigbio/quantms-utils/pull/52
• Added support for DIA-NN version 2.1.0 by @ypriverol in https://github.com/bigbio/quantms-utils/pull/53

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.20...v0.0.21

- Python
Published by ypriverol 10 months ago

https://github.com/bigbio/quantms-utils - v0.0.20

This major release includes functionalities to compute ms1, m2 features on mzml files.

What's Changed

• Improve parameters, logging, examples files and feature detection for mzmml statistics. by @ypriverol in https://github.com/bigbio/quantms-utils/pull/47
• Fix bruker issues. by @ypriverol in https://github.com/bigbio/quantms-utils/pull/48
• MS1Feature Finder output to parquet. by @ypriverol in https://github.com/bigbio/quantms-utils/pull/49
• Dev by @ypriverol in https://github.com/bigbio/quantms-utils/pull/50
• Update github actions, more examples added, remove filtering of features based on percentile tic. by @ypriverol in https://github.com/bigbio/quantms-utils/pull/51

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.19...v0.0.20

- Python
Published by ypriverol 12 months ago

https://github.com/bigbio/quantms-utils - v0.0.19

What's Changed

• Support for DIA-NN 2.0 by @daichengxin in https://github.com/bigbio/quantms-utils/pull/44
• fixed error and clean codes by @daichengxin in https://github.com/bigbio/quantms-utils/pull/45
• Remove feature components in favor of quantms-rescoring by @ypriverol in https://github.com/bigbio/quantms-utils/pull/46

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.18...v0.0.19

- Python
Published by ypriverol 12 months ago

https://github.com/bigbio/quantms-utils - v0.0.18

What's Changed

• Dev by @ypriverol in https://github.com/bigbio/quantms-utils/pull/41
• make diann2mztab optional for large-scale datasets by @daichengxin in https://github.com/bigbio/quantms-utils/pull/42
• major changes in mztab for large datasets by @ypriverol in https://github.com/bigbio/quantms-utils/pull/43 Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.17...v0.0.18

- Python
Published by ypriverol about 1 year ago

https://github.com/bigbio/quantms-utils - v0.0.17

What's Changed

• major refactoring about ms2rescore and pyarrow by @ypriverol in https://github.com/bigbio/quantms-utils/pull/39
• ms2rescore removed from the library. Library move to https://github.com/bigbio/quantms-rescoring
• mzML stremming use in favor of loading files in memory.
• standardization of mzml info parquet using quantms.io properties.

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.16...v0.0.17

- Python
Published by ypriverol about 1 year ago

https://github.com/bigbio/quantms-utils - v0.0.16

What's Changed

• Fixed ms2rescore bugs by @daichengxin in https://github.com/bigbio/quantms-utils/pull/36
• Major improvements of mzml statistics by @ypriverol in https://github.com/bigbio/quantms-utils/pull/37
• forcing OpenMS version higher than 2.4.0 by @ypriverol in https://github.com/bigbio/quantms-utils/pull/38 Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.15...v0.0.16

- Python
Published by ypriverol about 1 year ago

https://github.com/bigbio/quantms-utils - v0.0.15

What's Changed

• Support for version 1.9.2 by @ypriverol in https://github.com/bigbio/quantms-utils/pull/33
• ms2rescore fix version for DeepLC by @ypriverol in https://github.com/bigbio/quantms-utils/pull/34
• forcing more versions for compatibility. by @ypriverol in https://github.com/bigbio/quantms-utils/pull/35

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.12...v0.0.15

- Python
Published by ypriverol about 1 year ago

https://github.com/bigbio/quantms-utils - v0.0.12

What's Changed

• fixed diann scan and add ms2rescore arg by @daichengxin in https://github.com/bigbio/quantms-utils/pull/28
• fixed bugs when RT matched and DIA-NN Scan matched are inconsistent by @daichengxin in https://github.com/bigbio/quantms-utils/pull/30
• upgrade the sdrf-pipelines 0.0.29 -> 0.0.30 by @ypriverol in https://github.com/bigbio/quantms-utils/pull/29
• sdrf-pipelines 0.0.30 -> 0.0.31 by @ypriverol in https://github.com/bigbio/quantms-utils/pull/32

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.11...v0.0.12

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-utils - v0.0.11

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.10...v0.0.11

PR included some bug fixes #28: - Fixed some errors with USI generation for DIA-NN - Expose parameters from ms2rescore

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-utils - v0.0.10

What's Changed

• fixed tmt bug by @daichengxin in https://github.com/bigbio/quantms-utils/pull/26
• Dev by @ypriverol in https://github.com/bigbio/quantms-utils/pull/27

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.9...v0.0.10

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-utils - v0.0.9

What's Changed

• psm conversion tool updated by @ypriverol in https://github.com/bigbio/quantms-utils/pull/25

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.8...v0.0.9

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-utils - v0.0.8

What's Changed

• fixed spectrum2feature by @daichengxin in https://github.com/bigbio/quantms-utils/pull/23
• Bug fixed by @ypriverol in https://github.com/bigbio/quantms-utils/pull/24

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.7...v0.0.8

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-utils - v0.0.7

What's Changed

• Dev by @ypriverol in https://github.com/bigbio/quantms-utils/pull/21
• fixed bugs by @daichengxin in https://github.com/bigbio/quantms-utils/pull/20
• Minor changes by @ypriverol in https://github.com/bigbio/quantms-utils/pull/22

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.6...v0.0.7

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-utils - v0.0.6

What's Changed

• small changes in the dependencies by @ypriverol in https://github.com/bigbio/quantms-utils/pull/18
• Multiple errors fixed and more features added by @ypriverol in https://github.com/bigbio/quantms-utils/pull/19

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.5...v0.0.6

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-utils - v0.0.5

What's Changed

• Add SNR property to percolator by @ypriverol in https://github.com/bigbio/quantms-utils/pull/15
• move version 0.0.4 -> 0.0.5 by @ypriverol in https://github.com/bigbio/quantms-utils/pull/16
• update versions by @ypriverol in https://github.com/bigbio/quantms-utils/pull/17

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.4...v0.0.5

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-utils - v0.0.4

What's Changed

• increase ms2rescore version by @ypriverol in https://github.com/bigbio/quantms-utils/pull/14

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.3...v0.0.4

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-utils - v0.0.3

What's Changed

• black and isort applied [DO NOT MERGE] by @ypriverol in https://github.com/bigbio/quantms-utils/pull/9
• sync bin scripts by @daichengxin in https://github.com/bigbio/quantms-utils/pull/11
• boad added by @ypriverol in https://github.com/bigbio/quantms-utils/pull/10
• Major changes - including all sync from quantms by @ypriverol in https://github.com/bigbio/quantms-utils/pull/12
• Dev by @ypriverol in https://github.com/bigbio/quantms-utils/pull/13

New Contributors

• @daichengxin made their first contribution in https://github.com/bigbio/quantms-utils/pull/11

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.2...v0.0.3

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-utils - v0.0.2

What's Changed

• update the pypi by @ypriverol in https://github.com/bigbio/quantms-utils/pull/7
• switch to poetry build by @ypriverol in https://github.com/bigbio/quantms-utils/pull/8

Full Changelog: https://github.com/bigbio/quantms-utils/compare/v0.0.1...v0.0.2

- Python
Published by ypriverol over 1 year ago

https://github.com/bigbio/quantms-utils - v0.0.1

What's Changed

• Adding commands by @ypriverol in https://github.com/bigbio/quantms-utils/pull/1
• remove pyproject.toml by @ypriverol in https://github.com/bigbio/quantms-utils/pull/2
• debugging by @ypriverol in https://github.com/bigbio/quantms-utils/pull/3
• pyquantms -> quantms-utils by @ypriverol in https://github.com/bigbio/quantms-utils/pull/4
• Dev by @ypriverol in https://github.com/bigbio/quantms-utils/pull/5
• adding big tests for ms2rescore by @ypriverol in https://github.com/bigbio/quantms-utils/pull/6

New Contributors

• @ypriverol made their first contribution in https://github.com/bigbio/quantms-utils/pull/1

Full Changelog: https://github.com/bigbio/quantms-utils/commits/v0.0.1

- Python
Published by ypriverol over 1 year ago