Recent Releases of Magphi
Magphi - It is swooping season!
It is swooping season!
The 'humble' Australian magpie is renowned for "swooping" (attacking) by passers during their baby season. In honour of the magpie swooping season we overhauled Magphi and implemented some changes to make it a bit easier to use outputs and increase its scope of use.
What's Changed
tblastnimplemented as alternative to defaultblastn. This allows the use of amino acid seeds using-p. Thanks to Andrew (@BiologicalScientist)- Default behaviour is now to reorient fasta and gff files based on the same seed across genomes. This the same orientation in relation to stand and sequence, allowing for easier alignment of outputs.
Scientific Software - Peer-reviewed
- Python
Published by milnus over 3 years ago
Magphi - Post publication release v2
This is a tag bump to mitigate a PyPi upload hiccup
Scientific Software - Peer-reviewed
- Python
Published by milnus almost 4 years ago
Magphi - Post publication release
This release is the first following peer-review in Journal of open source software. Main things changed are documentation.
Scientific Software - Peer-reviewed
- Python
Published by milnus almost 4 years ago
Magphi - Release for submission
Release include - Better toy example with gff and a draft genome - Doc-strings for all functions - Paper edits
Scientific Software - Peer-reviewed
- Python
Published by milnus over 4 years ago
Magphi - Soft release
This release include an informative README file, a better exit when samtools faidx fails on an illiegal fasta file, and initial unit tests for converting BLAST xml to a bed file.
Scientific Software - Peer-reviewed
- Python
Published by milnus over 4 years ago
Magphi - Initial Mapghi release
This release of Mapghi is a functioning release, but is constructed mainly to test the Github actions for publishing Magphi
Scientific Software - Peer-reviewed
- Python
Published by milnus over 4 years ago