https://github.com/bihealth/stemcnv-check -

StemCNV-check release 0.5.4

Changed

• Updated stem-cell hotspot lists (CNVs and SNVs)

- R
Published by Nicolai-vKuegelgen 10 months ago

https://github.com/bihealth/stemcnv-check -

StemCNV-check release 0.5.3

Changed

• Updated precision estimation reference data
• Update CNV labels

- R
Published by Nicolai-vKuegelgen 11 months ago

https://github.com/bihealth/stemcnv-check -

StemCNV-check release 0.5.2

From Changelog:

Fixed

• Adapted to and pinned vembrane version to >=2.1,<3 (fixes penncnv input errors)
• Fixed sampletable parsing if xlsx file with comment lines on top was used

Changed

• Updated defaults dendrogram plotting in report

- R
Published by Nicolai-vKuegelgen 12 months ago

https://github.com/bihealth/stemcnv-check -

StemCNV-check release 0.5.1

From Changelog:

Added

• Added automated detection and usage of available cores and - on WSL only - memory, added --memory option

Fixed

• Fixed the annotated number of call in the precision estimation data
• Fixed crashes of makesummarytable when parsing PennCNV logs generated form wrongly annotated sex
• Fixed selection, log output and Maximum number restriction of sample_id collection for SNP clustering
• Fixed crashes caused by usage of snakemake pipe in WSl to/from /mnt/ drives (by not using pipe in those cases)
• Fixed counting of CNVs/LOhs for summary table to properly use the "callcountexcl_labels" config setting
• Fixed splitting of combined CNVs into individual callers for report and summary stats

Changed

• Updated mehari to version 0.35.1 and its transcript db to 0.10.3
• Updated descriptions and annotations in config file and report, renamed CNV and SNV labels to be more consistent
• Updated SNP clustering on WSL only to not parallelize vcf io, since memory overhead was considerable
• Improved report summary table by splitting it into Data QC (incl. the reference) and sample QC
• Updated usage of global array definition to ignore arrays not used in the current sampletable

- R
Published by Nicolai-vKuegelgen about 1 year ago

https://github.com/bihealth/stemcnv-check -

- R
Published by Nicolai-vKuegelgen about 1 year ago

https://github.com/bihealth/stemcnv-check - v0.4.1

Pre-release for testing purposes

- R
Published by Nicolai-vKuegelgen over 1 year ago

https://github.com/bihealth/stemcnv-check -

Pre-release for testing purposes

- R
Published by Nicolai-vKuegelgen over 1 year ago

https://github.com/bihealth/stemcnv-check - v0.3.0

Pre-release for testing purposes

- R
Published by Nicolai-vKuegelgen over 1 year ago