Dockerized Davrods

This is a dockerized version of Davrods tailored for use within Core Unit Bioinformatics at Berlin Institute of Health. It is based on the RIT-Davrods Docker image developed at the Maastricht University.

This image allows for configuring Davrods and iRODS via environment variables. Optional support for read-only anonymous ticket access is also included.

Note that in our use case, secure connections are handled by Traefik in the docker-compose environment. Thus we configure the host internally as HTTP.

This version supports iRODS v4.3.3 and may not be compatible with older or newer server versions.

Building

Use the provided build.sh script to build the image.

Commands

The following commands are available. If you specify anything else then the startup script will exec this command (e.g., bash).

• davrods-start (default) -- Start Davrods

Environment Variables

| Variable name | Default Value | |-------------------------------------|-----------------------------------| | IRODSPKGVERSION | 4.3.3 | | IRODSHOSTNAME | localhost | | IRODSZONEPORT | 1247 | | IRODSZONENAME | sodarZone | | IRODSSSLVERIFYSERVER | none | | IRODSSSLCACERTPATH | /etc/httpd/irods/irodsserver.crt | | IRODSCLIENTSERVERNEGOTIATION | off | | IRODSCLIENTSERVERPOLICY | CSNEGREFUSE | | DAVRODSVERSION | 1.5.1 | | DAVRODSIRODSVERSION (1) | 4.2.12 | | DAVRODSENABLETICKETS | 0 | | DAVRODSAUTHNAME | "Please log in." | | DAVRODSAUTHSCHEME (2) | native | | DAVRODSLOG_LEVEL (3) | info |

1. This should be the iRODS version set in the most recent build of Davrods we're modifying.
2. Until Davrods switches to using the new iRODS client plugins, this may require a different value than your iCommands auth scheme.
3. Set to debug to see iRODS client error messages in your logs.

Custom Theme

To introduce your own theme, use the /etc/httpd/irods/theme/ volume and copy or overwrite the Davrods HTML template files.