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biomodelos-sdm

BioModelos is a collaborative online system to map species distributions. This repository stores functions to automate the construction of Species Distribution Models (SDM) from databases gathered, managed and curated by The Alexander Von Humboldt Institute and a network of experts in order to be evaluated and refined.

https://github.com/pem-humboldt/biomodelos-sdm

Science Score: 26.0%

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    CITATION.cff file
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    Found .zenodo.json file
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    Scientific vocabulary similarity
    Low similarity (7.0%) to scientific vocabulary

Keywords

biogeography modeling species-distribution-modelling
Last synced: 6 months ago · JSON representation

Repository

BioModelos is a collaborative online system to map species distributions. This repository stores functions to automate the construction of Species Distribution Models (SDM) from databases gathered, managed and curated by The Alexander Von Humboldt Institute and a network of experts in order to be evaluated and refined.

Basic Info
  • Host: GitHub
  • Owner: PEM-Humboldt
  • License: mit
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 205 MB
Statistics
  • Stars: 12
  • Watchers: 4
  • Forks: 4
  • Open Issues: 14
  • Releases: 1
Topics
biogeography modeling species-distribution-modelling
Created about 5 years ago · Last pushed 11 months ago
Metadata Files
Readme License Citation

README.md

BioModelos: Species Distribution Maps from Colombian species

BioModelos is a collaborative online system to map species distributions (Velsquez-Tibata et al, 2019). This repository stores functions to automate the construction of Species Distribution Models (SDM) from databases gathered, managed and curated by The Alexander Von Humboldt Institute and a network of experts in order to be evaluated and refined.

Current state: in development.

Folders

Pre-processing

This folder includes routines that produce layers and data necessaries to run ecological niche models. The first implementation correspond to the obtention of mask in GIS format to cut environmental layers.

Modelling

This folder includes functions and routines necessary to run ecological niche models using Maxent. These routines represent the BioModelos backbone used to infer spatial distribution models.

Post-Processing

This folder includes functions and routines proposed to clean ecological niche models and to obtain products based on the BioModelos, such as species richness maps, vulnerability index, and others that could be used as indicators.

Study-cases

This folder includes functions and routines (Pre-processing, modeling, post-processing) modified to run models to specific cases or biological groups. Other examples in Spanish and English are available online through the Biodiversity and Climate Change website

Authors and contact

Collaborators

Acknowledgment

This development is supported by National Geographic Society Grant #NGS-86896T-21, project "Developing an integrated species distribution modelling system to identify complementary conservation areas in Colombia". Project information* * Initial phases of the project were supported by Natural map.

License

This project is licensed under the MIT License - see the License.md file for details

Owner

  • Name: Dirección de Conocimiento
  • Login: PEM-Humboldt
  • Kind: organization
  • Location: Bogotá, Colombia

Dirección de Conocimiento (Gerencia de Información Científica y Estudios Socioecológicos y Cambio Global)

GitHub Events

Total
  • Watch event: 1
  • Push event: 15
Last Year
  • Watch event: 1
  • Push event: 15

Committers

Last synced: about 2 years ago

All Time
  • Total Commits: 218
  • Total Committers: 5
  • Avg Commits per committer: 43.6
  • Development Distribution Score (DDS): 0.463
Past Year
  • Commits: 55
  • Committers: 3
  • Avg Commits per committer: 18.333
  • Development Distribution Score (DDS): 0.109
Top Committers
Name Email Commits
Carlos Munoz c****z@h****o 117
Carlos Munoz c****l@g****m 86
Elkin A. Noguera-Urbano 4****o 12
Camilo Zapata c****3@g****m 2
Carlos Jair Muñoz Rodriguez c****z@h****l 1
Committer Domains (Top 20 + Academic)
humboldt.org.co: 1

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 16
  • Total pull requests: 0
  • Average time to close issues: 30 days
  • Average time to close pull requests: N/A
  • Total issue authors: 2
  • Total pull request authors: 0
  • Average comments per issue: 0.31
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 2
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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Top Authors
Issue Authors
  • cmunozr (14)
  • nleuro-SiB (1)
Pull Request Authors
Top Labels
Issue Labels
enhancement (8) documentation (5) bug (5) invalid (4) help wanted (2) question (2)
Pull Request Labels