Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic links in README
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Unable to calculate vocabulary similarity
Last synced: 11 months ago
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JSON representation
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Repository
Basic Info
- Host: GitHub
- Owner: bioconductor-source
- Language: R
- Default Branch: devel
- Size: 33.5 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Created almost 2 years ago
· Last pushed almost 2 years ago
Metadata Files
Citation
Owner
- Name: (WIP DEV) Bioconductor Packages
- Login: bioconductor-source
- Kind: organization
- Email: maintainer@bioconductor.org
- Website: https://bioconductor.org
- Repositories: 1
- Profile: https://github.com/bioconductor-source
Source code for packages accepted into Bioconductor
Citation (CITATION.cff)
# -----------------------------------------------------------
# CITATION file created with {cffr} R package, v0.1.1
# See also: https://docs.ropensci.org/cffr/
# -----------------------------------------------------------
cff-version: 1.2.0
message: 'To cite package "graphite" in publications use:'
type: software
license: AGPL-3.0-only
title: 'graphite: GRAPH Interaction from pathway Topological Environment'
version: 1.41.1
abstract: Graph objects from pathway topology derived from KEGG, Panther, PathBank,
PharmGKB, Reactome SMPDB and WikiPathways databases.
authors:
- family-names: Sales
given-names: Gabriele
email: gabriele.sales@unipd.it
- family-names: Calura
given-names: Enrica
email: enrica.calura@gmail.com
- family-names: Romualdi
given-names: Chiara
email: chiara.romualdi@unipd.it
preferred-citation:
type: article
title: graphite - a Bioconductor package to convert pathway topology to gene network
authors:
- family-names: Sales
given-names: Gabriele
- family-names: Calura
given-names: Enrica
- family-names: Cavalieri
given-names: Duccio
- family-names: Romualdi
given-names: Chiara
journal: BMC Bioinformatics
year: '2012'
url: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-13-20
repository: https://bioconductor.org/
date-released: '2021-11-30'
contact:
- family-names: Sales
given-names: Gabriele
email: gabriele.sales@unipd.it
references:
- type: article
title: metaGraphite - a new layer of pathway annotation to get metabolite networks
authors:
- family-names: Sales
given-names: Gabriele
- family-names: Calura
given-names: Enrica
- family-names: Romualdi
given-names: Chiara
journal: Bioinformatics
year: '2018'
url: https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty719/5090451
GitHub Events
Total
Last Year
Dependencies
.github/workflows/check-bioc.yml
actions
- JamesIves/github-pages-deploy-action releases/v4 composite
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/upload-artifact master composite
- docker/build-push-action v4 composite
- docker/login-action v2 composite
- docker/setup-buildx-action v2 composite
- docker/setup-qemu-action v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-tinytex v2 composite
DESCRIPTION
cran
- R >= 4.2 depends
- methods * depends
- AnnotationDbi * imports
- graph >= 1.67.1 imports
- graphics * imports
- httr * imports
- purrr * imports
- rappdirs * imports
- rlang * imports
- stats * imports
- utils * imports
- ALL * suggests
- BiocStyle * suggests
- R.rsp * suggests
- RCy3 * suggests
- SPIA >= 2.2 suggests
- a4Preproc * suggests
- checkmate * suggests
- codetools * suggests
- hgu133plus2.db * suggests
- hgu95av2.db * suggests
- impute * suggests
- knitr * suggests
- org.Hs.eg.db * suggests
- parallel * suggests
- rmarkdown * suggests
- testthat * suggests
- topologyGSA >= 1.4.0 suggests