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https://github.com/bimberlab/nimble-aligner

nimble-aligner is the backend for nimble, a tool that executes lightweight, flexible alignments to generate supplemental alignment data

https://github.com/bimberlab/nimble-aligner

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (4.7%) to scientific vocabulary

Keywords

alignment bio rna-seq rust
Last synced: 6 months ago · JSON representation

Repository

nimble-aligner is the backend for nimble, a tool that executes lightweight, flexible alignments to generate supplemental alignment data

Basic Info
  • Host: GitHub
  • Owner: BimberLab
  • License: mit
  • Language: Rust
  • Default Branch: main
  • Homepage:
  • Size: 519 KB
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 1
  • Open Issues: 3
  • Releases: 100
Topics
alignment bio rna-seq rust
Created over 5 years ago · Last pushed 10 months ago
Metadata Files
Readme License

README.md

nimble-aligner

nimble should be installed and used via the Python CLI.

nimble-aligner contains the core alignment code that powers nimble, a tool for generating supplemental counts with RNA-seq/scRNA-seq data on customizable reference genomes. While this repo can be compiled and ran by itself, the CLI frontend provides ease of installation, multi-platform support, and routines for creating custom genomes, among other use-cases.

Owner

  • Name: Bimber Lab
  • Login: BimberLab
  • Kind: organization

Software created by the Bimber Lab of OHSU

GitHub Events

Total
  • Release event: 18
  • Delete event: 5
  • Issue comment event: 1
  • Push event: 15
  • Pull request event: 5
  • Create event: 20
Last Year
  • Release event: 18
  • Delete event: 5
  • Issue comment event: 1
  • Push event: 15
  • Pull request event: 5
  • Create event: 20

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 0
  • Total pull requests: 3
  • Average time to close issues: N/A
  • Average time to close pull requests: less than a minute
  • Total issue authors: 0
  • Total pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 3
  • Average time to close issues: N/A
  • Average time to close pull requests: less than a minute
  • Issue authors: 0
  • Pull request authors: 2
  • Average comments per issue: 0
  • Average comments per pull request: 0.0
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
  • hextraza (4)
  • bbimber (1)
Top Labels
Issue Labels
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Dependencies

.github/workflows/ci.yml actions
  • actions-rs/cargo v1 composite
  • actions-rs/toolchain v1 composite
  • actions/checkout v3 composite
.github/workflows/release.yml actions
  • actions/checkout v3 composite
  • softprops/action-gh-release v1 composite
Cargo.toml cargo