https://github.com/bio-phys/af2_lir_screen
AlphaFold2 Multimer pipeline to identify candidate LIR motifs
Science Score: 26.0%
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○Scientific vocabulary similarity
Low similarity (3.3%) to scientific vocabulary
Keywords
alphafold2
atg8-aim
lc3-lir
Last synced: 6 months ago
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Repository
AlphaFold2 Multimer pipeline to identify candidate LIR motifs
Basic Info
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- Stars: 1
- Watchers: 1
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Topics
alphafold2
atg8-aim
lc3-lir
Created over 1 year ago
· Last pushed about 1 year ago
Metadata Files
Readme
License
README.md
These scripts are meant to be used together with the alphapulldown pipeline (https://github.com/KosinskiLab/AlphaPulldown, tested for versions 0.22.3 and 0.30.7) to identify potential novel LIRs.
They generate input files, analyze the resulting structural predictions, and summarize the results.
Requirements (Python)
- python 3.10.9
- matplotlib 3.7.1
- MDAnalysis 2.3.0
- mdtraj 1.9.7
- biopython 1.78
- pymol 2.5.7
Other requirements
- msms 2.2.6.1
If you use these scripts for a scientific publication, please cite https://doi.org/10.1101/2024.09.06.611604 .
Owner
- Name: bio-phys
- Login: bio-phys
- Kind: organization
- Repositories: 14
- Profile: https://github.com/bio-phys
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Last Year
- Release event: 1
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