Recent Releases of GigaSOM
GigaSOM - v0.6.8
GigaSOM v0.6.8
Closed issues: - add CITATION.cff file (#198)
Merged pull requests: - update compathelper action (#197) (@exaexa) - Clean up a bit, add container building (#199) (@exaexa) - Add citation info (#200) (@exaexa) - develop → master merge for 0.6.8 (#201) (@exaexa)
- Julia
Published by github-actions[bot] over 4 years ago
GigaSOM - v0.6.7
GigaSOM v0.6.7
Closed issues: - Bump version v0.6.6 (#191)
Merged pull requests: - update the CI for the new gitlab (#193) (@exaexa) - update ci, attempt 2 (#194) (@exaexa) - regular merge of develop (#195) (@exaexa) - Bump version to 0.6.7 (#196) (@exaexa)
- Julia
Published by github-actions[bot] almost 5 years ago
GigaSOM - v0.6.5
GigaSOM v0.6.5
Closed issues: - Bump version v0.6.4 (#180) - Accessing the intermediate SOM states during the training (#182)
Merged pull requests: - change trigger action for docker (#181) (@laurentheirendt) - support user-specified callbacks after each SOM training epoch (#183) (@exaexa) - Fix the error accidentally introduced in PR#183 (#184) (@exaexa) - Develop (#185) (@laurentheirendt) - CompatHelper: bump compat for "DataFrames" to "1.0" (#186) (@github-actions[bot]) - CompatHelper: bump compat for "Distributions" to "0.25" (#187) (@github-actions[bot])
- Julia
Published by github-actions[bot] about 5 years ago
GigaSOM - v0.6.4
GigaSOM v0.6.4
Closed issues: - remove deprecation warnings (#165) - Bump version v0.6.3 (#175)
Merged pull requests: - slight update of workflow scripts (#176) (@exaexa) - remove deprecated DataFrame usage (#177) (@exaexa) - feature: Add docker creation (#178) (@laurentheirendt) - Develop (#179) (@laurentheirendt)
- Julia
Published by github-actions[bot] about 5 years ago
GigaSOM - v0.6.3
GigaSOM v0.6.3
Closed issues: - clim kwarg in expressionPalette or expressionColors (#171)
Merged pull requests: - only run nightly on develop (#169) (@laurentheirendt) - Regular merge of develop (#170) (@laurentheirendt) - fix stable version of docs (#172) (@laurentheirendt) - remove windows latest on ci branch (#173) (@laurentheirendt) - bump version (#174) (@laurentheirendt)
- Julia
Published by github-actions[bot] over 5 years ago
GigaSOM - v0.6.2
GigaSOM v0.6.2
Closed issues: - add wrapper for sub-clustering (#107) - Bump version v0.6.1 (#156) - Adding CSV file import (#159)
Merged pull requests: - CompatHelper: bump compat for "Distributions" to "0.24" (#157) (@github-actions[bot]) - CompatHelper: bump compat for "Distances" to "0.10" (#158) (@github-actions[bot]) - CSV file input helpers (#160) (@exaexa) - CompatHelper: bump compat for "CSV" to "0.8" (#161) (@github-actions[bot]) - Regular merge of develop (#163) (@laurentheirendt) - remove runtests script and add gitlab ci (#164) (@laurentheirendt) - new nodes on gitlab CI (#166) (@laurentheirendt)
- Julia
Published by github-actions[bot] over 5 years ago
GigaSOM - v0.6.1
GigaSOM v0.6.1
Closed issues: - add RRID to doc (#146) - Bump version v0.6.0 (#150)
Merged pull requests: - Fix the XLSX use in docs (#153) (@exaexa) - add RRID to the README (#154) (@exaexa) - Regular merge of develop (#155) (@laurentheirendt)
- Julia
Published by github-actions[bot] over 5 years ago
GigaSOM - v0.6.0
GigaSOM v0.6.0
Closed issues: - possible test failure in upcoming Julia version 1.5 (#132) - Bump version v0.5.1 (#143) - fix seed for random initialization of the SOM (#144) - Issue with parallel computation (#145)
Merged pull requests: - use StableRNGs for initialization (#147) (@exaexa) - add minor version in toml (#148) (@laurentheirendt) - Regular merge of develop (#149) (@laurentheirendt) - CompatHelper: add new compat entry for "StableRNGs" at version "1.0" (#151) (@github-actions[bot]) - Regular merge of develop (#152) (@laurentheirendt)
- Julia
Published by github-actions[bot] over 5 years ago
GigaSOM - v0.5.1
GigaSOM v0.5.1
Closed issues: - Bump version v0.5.0 (#138)
Merged pull requests: - CompatHelper: bump compat for "XLSX" to "0.7" (#139) (@github-actions[bot]) - CompatHelper: bump compat for "CSV" to "0.7" (#140) (@github-actions[bot]) - bump version (#141) (@laurentheirendt) - Regular merge of develop (#142) (@laurentheirendt)
- Julia
Published by github-actions[bot] almost 6 years ago
GigaSOM - v0.5.0
GigaSOM v0.5.0
Closed issues: - add sample_id to distributed file splitting (#84) - implement consensus clustering in pure Julia (#85) - Bump version v0.4.2 (#128)
Merged pull requests: - Implement easy computation of per-file stats (#129) (@exaexa) - implement load-time columns selection (#130) (@exaexa) - apply JuliaFormatter (#131) (@exaexa) - CompatHelper: bump compat for "DataFrames" to "0.21" (#133) (@github-actions[bot]) - CompatHelper: bump compat for "Distances" to "0.9" (#134) (@github-actions[bot]) - Regular merge of develop (#135) (@laurentheirendt) - bump version (#136) (@laurentheirendt) - Regular merge of develop (#137) (@laurentheirendt)
- Julia
Published by github-actions[bot] about 6 years ago
GigaSOM - v0.4.2
GigaSOM v0.4.2
Merged pull requests: - add release event to yml (#124) (@laurentheirendt) - add infer_eltypes to tutorial (#125) (@laurentheirendt) - bump version (#126) (@laurentheirendt) - Regular merge of develop (#127) (@laurentheirendt)
- Julia
Published by github-actions[bot] about 6 years ago
GigaSOM - v0.4.1
GigaSOM v0.4.1
Closed issues: - Bump version v0.4.0 (#119)
Merged pull requests: - Use Github Actions to deploy docs (#120) (@laurentheirendt) - Add evolution gif and minor changes (#121) (@laurentheirendt) - Regular merge of develop (#122) (@laurentheirendt)
- Julia
Published by github-actions[bot] about 6 years ago
GigaSOM - v0.4.0
GigaSOM v0.4.0
Closed issues: - Bump version v0.3.2 (#111)
Merged pull requests: - check length of FCS keyword names before trying to interpret them (#112) (@exaexa) - README facelift (#113) (@exaexa) - Add code of conduct (#114) (@laurentheirendt) - Add contributing guide and pr/issue templates (#115) (@laurentheirendt) - Minor changes readme (#116) (@laurentheirendt) - Regular merge of develop (#117) (@laurentheirendt) - Regular merge of develop (#118) (@laurentheirendt)
- Julia
Published by github-actions[bot] about 6 years ago
GigaSOM - v0.3.2
GigaSOM v0.3.2
Closed issues: - Bump version v0.3.1 (#105)
Merged pull requests: - CompatHelper: bump compat for "Distributions" to "0.23" (#106) (@github-actions[bot]) - CompatHelper: bump compat for "CSV" to "0.6" (#108) (@github-actions[bot]) - Regular merge of develop (#109) (@laurentheirendt) - bump version (#110) (@laurentheirendt)
- Julia
Published by github-actions[bot] about 6 years ago
GigaSOM - v0.3.1
GigaSOM v0.3.1
Closed issues: - Bump version v0.3.0 (#101)
Merged pull requests: - remove devbranch (#102) (@laurentheirendt) - set dev branch to env var (#103) (@laurentheirendt) - Regular merge of develop (#104) (@laurentheirendt)
- Julia
Published by github-actions[bot] about 6 years ago
GigaSOM - v0.3.0
GigaSOM v0.3.0
Closed issues: - Update documentation (#66) - Bump version v0.2.2 (#79)
Merged pull requests: - Parallel I/O (#81) (@laurentheirendt) - Parallel io additions (#83) (@oHunewald) - Update EmbedSOM implementation to that of R package v2.0 (#86) (@exaexa) - Fix performance regression (using DataFrames in low-level code) (#87) (@exaexa) - Install TagBot as a GitHub Action (#88) (@JuliaTagBot) - add compat helper (#89) (@laurentheirendt) - generalize the distributed operations (#90) (@exaexa) - CompatHelper: bump compat for "Distributions" to "0.22" (#91) (@github-actions[bot]) - CompatHelper: add new compat entry for "DataFrames" at version "0.20" (#92) (@github-actions[bot]) - make readFlowFrame work on FCSs from common flow-based machines (#93) (@exaexa) - CompatHelper: bump compat for "XLSX" to "0.6" (#94) (@github-actions[bot]) - make the APIs slightly more orthogonal (#95) (@exaexa) - Update doc (#96) (@laurentheirendt) - bump version (#97) (@laurentheirendt) - make distributed_mapreduce much less memory-hungry (#98) (@exaexa) - CompatHelper: add new compat entry for "JSON" at version "0.21" (#99) (@github-actions[bot]) - Regular merge of develop (#100) (@laurentheirendt)
- Julia
Published by github-actions[bot] about 6 years ago
GigaSOM - v0.2.2
v0.2.2 (2019-12-02)
Closed issues:
- Bump version v0.2.1 (#72)
Merged pull requests:
- Regular merge of develop (#80) (laurentheirendt)
- Regular merge of develop (#78) (laurentheirendt)
- add mailmap (#77) (laurentheirendt)
- Function testing (#76) (oHunewald)
- Code cleaning (#75) (oHunewald)
- Test improved io (#74) (oHunewald)
- Improve io (#73) (oHunewald)
- Julia
Published by julia-tagbot[bot] over 6 years ago
GigaSOM - v0.2.1
v0.2.1 (2019-10-04)
Closed issues:
- support for different distance metrics (#68)
- Bump version v0.2.0 (#64)
Merged pull requests:
- Regular merge of develop (#71) (laurentheirendt)
- Allow using various metrics from NearestNeighbors. (#70) (exaexa)
- chained fetch and spawn (#69) (oHunewald)
- Fix for codecov (#67) (laurentheirendt)
- Julia
Published by julia-tagbot[bot] over 6 years ago
GigaSOM - v0.2.0
v0.2.0 (2019-09-08)
Closed issues:
- Bump version v0.1.0 (#43)
Merged pull requests:
- Regular merge of develop (#65) (laurentheirendt)
- Regular merge of develop (#61) (laurentheirendt)
- Large FCS file i/o (#60) (oHunewald)
- removed dataframe deprecated warinings (#59) (oHunewald)
- EmbedSOM+optimizations (#54) (exaexa)
- add julia 1.2.0 support (#53) (laurentheirendt)
- Exp radius decay (#45) (oHunewald)
- changed to enumerate workers (#44) (oHunewald)
- Julia
Published by julia-tagbot[bot] over 6 years ago
GigaSOM - v0.1.0
v0.1.0 (2019-07-23)
Closed issues:
- Bump version v0.0.5 (#17)
Merged pull requests:
- Regular merge of develop (#42) (laurentheirendt)
- Update of documentation (#41) (laurentheirendt)
- added mwe (#40) (oHunewald)
- Vasco run faster (#39) (VascoVerissimo)
- Instructions (#38) (laurentheirendt)
- Checksums/Test Path/Clean Docs (#37) (VascoVerissimo)
- Vascos doc (#36) (VascoVerissimo)
- docs polishing (#35) (VascoVerissimo)
- Parallelize function visual (#33) (oHunewald)
- General fix for test suite (#31) (laurentheirendt)
- Revert 10 epochs in testing and float32 (#30) (laurentheirendt)
- replace findWinnners with find_bmu (#29) (laurentheirendt)
- replace numCodes and numDat with nCodes and nRows (#28) (laurentheirendt)
- Draft of documentation (#27) (VascoVerissimo)
- Update function headers (#26) (oHunewald)
- Move to float32 (#25) (oHunewald)
- More tests (#24) (VascoVerissimo)
- Clean up (#23) (oHunewald)
- Julia
Published by julia-tagbot[bot] almost 7 years ago
GigaSOM - v0.0.5
v0.0.5 (2019-06-07)
Merged pull requests:
- Regular merge of develop (#16) (laurentheirendt)
- Oliver (#15) (oHunewald)
- Create tests (#14) (VascoVerissimo)
- Restructure of Repository (#12) (VascoVerissimo)
- Changed path (#11) (VascoVerissimo)
- Reorganize src folder (#10) (laurentheirendt)
- Add documentation generation (#9) (laurentheirendt)
- Prototype of parallel SOM (#8) (oHunewald)
- pkg rm in artenolis yml (#7) (laurentheirendt)
- Julia
Published by julia-tagbot[bot] almost 7 years ago