Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/biocommons/biocommons.github.io

biocommons website

https://github.com/biocommons/biocommons.github.io

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.5%) to scientific vocabulary

Keywords

bioinformatics genome-analysis genomics sequencing variant-analysis variation
Last synced: 5 months ago · JSON representation

Repository

biocommons website

Basic Info
  • Host: GitHub
  • Owner: biocommons
  • License: apache-2.0
  • Language: Python
  • Default Branch: main
  • Homepage: https://biocommons.org/
  • Size: 4.75 MB
Statistics
  • Stars: 1
  • Watchers: 3
  • Forks: 2
  • Open Issues: 2
  • Releases: 0
Topics
bioinformatics genome-analysis genomics sequencing variant-analysis variation
Created over 9 years ago · Last pushed 6 months ago
Metadata Files
Readme Contributing License Codeowners

README.md

biocommons.org website

Setup

python3 -m venv venv
source venv/bin/activate
pip install -U pip setuptools
pip install -r requirements.txt

Also, you are strongly encouraged to use vscode to edit this site, with these extensions:

- https://marketplace.visualstudio.com/items?itemName=hediet.vscode-drawio
- https://marketplace.visualstudio.com/items?itemName=bierner.github-markdown-preview
- https://marketplace.visualstudio.com/items?itemName=DavidAnson.vscode-markdownlint
- https://marketplace.visualstudio.com/items?itemName=tomoyukim.vscode-mermaid-editor

If you want to add or edit diagrams, you must use the above configuration.

Write

source venv/bin/activate
make serve

Deploy

Deployment is manual, not using GitHub actions.

source venv/bin/activate
make deploy

Redirect map

In order to ensure the continuity of urls, docs/redirect-map.yml tracks markdown file paths that have existed at any time. Use make update-redirect-map to update the file, then manually copy selected redirects to mkdocs.yml in the redirect_map section. (mkdocs-redirects does not currenlty support redirects from a file :-()

Owner

  • Name: biocommons
  • Login: biocommons
  • Kind: organization

a collection of open source bioinformatics tools

GitHub Events

Total
  • Issues event: 3
  • Delete event: 4
  • Issue comment event: 1
  • Push event: 22
  • Pull request event: 7
  • Pull request review event: 7
  • Create event: 7
Last Year
  • Issues event: 3
  • Delete event: 4
  • Issue comment event: 1
  • Push event: 22
  • Pull request event: 7
  • Pull request review event: 7
  • Create event: 7

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 5
  • Total pull requests: 6
  • Average time to close issues: 5 days
  • Average time to close pull requests: 5 days
  • Total issue authors: 2
  • Total pull request authors: 1
  • Average comments per issue: 0.2
  • Average comments per pull request: 0.17
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 3
  • Pull requests: 6
  • Average time to close issues: 6 days
  • Average time to close pull requests: 5 days
  • Issue authors: 2
  • Pull request authors: 1
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.17
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • korikuzma (3)
  • henrykironde (1)
Pull Request Authors
  • korikuzma (6)
  • jsstevenson (1)
Top Labels
Issue Labels
enhancement (2)
Pull Request Labels

Dependencies

requirements.txt pypi
  • mkdocs *
  • mkdocs-awesome-pages-plugin *
  • mkdocs-material *
  • mkdocs-mermaid2-plugin *
  • mkdocs-multirepo-plugin *