https://github.com/biocomputingup/geometre_results
GeomeTRe calculation results for STRPs from RepeatsDB v4, including large-scale and statistical analyses. Reproducible Jupyter Notebook scripts are available in this repository.
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.8%) to scientific vocabulary
Repository
GeomeTRe calculation results for STRPs from RepeatsDB v4, including large-scale and statistical analyses. Reproducible Jupyter Notebook scripts are available in this repository.
Basic Info
- Host: GitHub
- Owner: BioComputingUP
- Language: Jupyter Notebook
- Default Branch: main
- Size: 24.8 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
GeomeTRe_results
This repository contains the code, data and figures provided aas Supplementary information for the GeomeTRe software publication.
Data
data
├─ figures # Figures generated by the notebook
├─ geometre # Input / output files of GeomeTRe software
│ ├─ input_design.tsv # Designed proteins from ROSETTA paper (including unit annotations)
│ ├─ input_repeatsdb4_filtered.tsv # RepeatsDB annotated proteins (aftyer removing low quality structures)
│ ├─ output_design_geometre.csv
│ └─ output_repeatsdb4_geometre.csv
├─ repeatparam
│ └─ output_repeatparam.csv # Output of the RepeatParam software
├─ repeatsdb4_classification.json # RepeatsDB metadata (unit definitions and classification)
└─ repeatsdb4_designed.tsv # IDs of designed proteins in RepeatsDB
Owner
- Name: BioComputing Group, University of Padova
- Login: BioComputingUP
- Kind: organization
- Email: biocomp@bio.unipd.it
- Location: Italy
- Website: https://biocomputingup.it/
- Repositories: 31
- Profile: https://github.com/BioComputingUP
GitHub Events
Total
- Delete event: 1
- Push event: 5
- Public event: 1
- Create event: 1
Last Year
- Delete event: 1
- Push event: 5
- Public event: 1
- Create event: 1
Committers
Last synced: 11 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Damiano Piovesan | d****n@g****m | 8 |
| Zarifa Osmanli | z****i@g****m | 6 |
Issues and Pull Requests
Last synced: 11 months ago