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https://github.com/biocomputingup/drmaatic-lib

https://github.com/biocomputingup/drmaatic-lib

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
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    DOI references
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    Scientific vocabulary similarity
    Low similarity (5.3%) to scientific vocabulary
Last synced: 9 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: BioComputingUP
  • Language: Python
  • Default Branch: main
  • Size: 8.79 KB
Statistics
  • Stars: 0
  • Watchers: 3
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 2 years ago · Last pushed over 1 year ago
Metadata Files
Readme

README.md

DRMAAtic-lib

Scheduling libraries for DRMAAtic @BioCompUP, wrapping the drmaa-python library and adding the implementations for Slurm and SGE.

Installation

shell pip install DRMAAtic-lib This will also pull the drmaa-python library. You can see the latest version of the library here.

Requirements

  • Slurm or SGE installed
  • libslurm-dev library for Slurm or gridengine-dev for SGE, both downloadable with apt
  • libdrmaa C bindings for Slurm or SGE
  • drmaa-python python library

ENV variables

Set the env variables for the drmaa-python library. With PyCharm you can set this env variables in the run configuration.

SGE

shell export SGE_ROOT=/path/to/gridengine export SGE_CELL=default

SLURM

Set the path to the libdrmaa library C binding shell export DRMAA_LIBRARY_PATH=/usr/lib/slurm-drmaa/libdrmaa.so

Owner

  • Name: BioComputing Group, University of Padova
  • Login: BioComputingUP
  • Kind: organization
  • Email: biocomp@bio.unipd.it
  • Location: Italy

GitHub Events

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Last synced: about 1 year ago

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Dependencies

setup.py pypi
  • drmaa *