https://github.com/bioconductor/genomicranges
Representation and manipulation of genomic intervals
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
4 of 28 committers (14.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.4%) to scientific vocabulary
Keywords
bioconductor-package
core-package
Keywords from Contributors
genomics
bioconductor
bioinformatics
u24ca289073
gene
mass-spectrometry
core-services
transcriptome
metabolomics
bioc
Last synced: 6 months ago
·
JSON representation
Repository
Representation and manipulation of genomic intervals
Basic Info
- Host: GitHub
- Owner: Bioconductor
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/GenomicRanges
- Size: 9.01 MB
Statistics
- Stars: 46
- Watchers: 8
- Forks: 19
- Open Issues: 33
- Releases: 0
Topics
bioconductor-package
core-package
Created over 8 years ago
· Last pushed 6 months ago
Metadata Files
Readme
Changelog
README.md
GenomicRanges is an R/Bioconductor package for representing and manipulating genomic intervals.
See https://bioconductor.org/packages/GenomicRanges for more information including how to install the release version of the package (please refrain from installing directly from GitHub).
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
Total
- Issues event: 7
- Watch event: 4
- Issue comment event: 2
- Push event: 7
- Pull request event: 1
- Fork event: 1
- Create event: 2
Last Year
- Issues event: 7
- Watch event: 4
- Issue comment event: 2
- Push event: 7
- Pull request event: 1
- Fork event: 1
- Create event: 2
Committers
Last synced: 9 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Herve Pages | h****s@f****g | 850 |
| Valerie Obenchain | v****a@f****g | 268 |
| Michael Lawrence | l****i@i****u | 188 |
| Hervé Pagès | h****s@f****g | 173 |
| Martin Morgan | m****n@f****g | 107 |
| Patrick Aboyoun | u****n | 55 |
| Marc Carlson | m****n@f****g | 36 |
| Nishant Gopalakrishnan | n****k@f****g | 35 |
| Dan Tenenbaum | d****a@f****g | 35 |
| James Hester | j****r@f****g | 21 |
| Sonali Arora | s****a@f****g | 19 |
| Daniel Van Twisk | d****k@r****g | 15 |
| Nitesh Turaga | n****a@g****m | 14 |
| J Wokaty | j****y@s****u | 11 |
| LiNk-NY | m****9@g****m | 10 |
| Michael Lawrence | m****a@g****m | 7 |
| Kayla-Morrell | K****l@r****g | 6 |
| Lori Shepherd | L****d@R****g | 6 |
| vobencha | v****n@r****g | 5 |
| Martin Morgan | M****n@R****g | 5 |
| Steve Lianoglou | s****u@g****m | 3 |
| A Wokaty | a****y@s****u | 2 |
| Chao-Jen Wong | c****2@f****g | 2 |
| Vince Carey | s****c@c****u | 2 |
| vobencha | v****a@g****m | 2 |
| Peter Hickey | p****y@g****m | 2 |
| Levi Waldron | l****h@g****m | 1 |
| aoles | a****s@g****m | 1 |
Committer Domains (Top 20 + Academic)
fhcrc.org: 8
roswellpark.org: 5
sph.cuny.edu: 2
fredhutch.org: 2
channing.harvard.edu: 1
gene.com: 1
iastate.edu: 1
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 75
- Total pull requests: 18
- Average time to close issues: about 1 month
- Average time to close pull requests: 9 months
- Total issue authors: 45
- Total pull request authors: 11
- Average comments per issue: 2.72
- Average comments per pull request: 4.28
- Merged pull requests: 7
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 6
- Pull requests: 0
- Average time to close issues: 20 days
- Average time to close pull requests: N/A
- Issue authors: 3
- Pull request authors: 0
- Average comments per issue: 0.33
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- gevro (12)
- LTLA (7)
- hpages (6)
- Roleren (3)
- DarioS (3)
- mtmorgan (2)
- LiNk-NY (2)
- kasperdanielhansen (2)
- PeteHaitch (2)
- ssayols (1)
- LuukHenk (1)
- FelixErnst (1)
- llrs (1)
- vjcitn (1)
- cb4github (1)
Pull Request Authors
- LiNk-NY (6)
- LTLA (2)
- namhoangubs (2)
- lwaldron (1)
- vjcitn (1)
- PeteHaitch (1)
- alexandremkuhn (1)
- hsadia538 (1)
- dvantwisk (1)
- bschilder (1)
- FelixErnst (1)
Top Labels
Issue Labels
enhancement (1)
Pull Request Labels
Dependencies
DESCRIPTION
cran
- BiocGenerics >= 0.37.0 depends
- GenomeInfoDb >= 1.15.2 depends
- IRanges >= 2.31.2 depends
- R >= 4.0.0 depends
- S4Vectors >= 0.27.12 depends
- methods * depends
- stats4 * depends
- XVector >= 0.29.2 imports
- stats * imports
- utils * imports
- AnnotationDbi * suggests
- AnnotationHub * suggests
- BSgenome * suggests
- BSgenome.Hsapiens.UCSC.hg19 * suggests
- BSgenome.Mmusculus.UCSC.mm10 * suggests
- BSgenome.Scerevisiae.UCSC.sacCer2 * suggests
- Biobase * suggests
- BiocStyle * suggests
- Biostrings >= 2.25.3 suggests
- DESeq2 * suggests
- DEXSeq * suggests
- GenomicAlignments * suggests
- GenomicFeatures * suggests
- Gviz * suggests
- KEGGREST * suggests
- KEGGgraph * suggests
- Matrix * suggests
- RNAseqData.HNRNPC.bam.chr14 * suggests
- RUnit * suggests
- Rsamtools >= 1.13.53 suggests
- SummarizedExperiment >= 0.1.5 suggests
- TxDb.Athaliana.BioMart.plantsmart22 * suggests
- TxDb.Dmelanogaster.UCSC.dm3.ensGene * suggests
- TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
- TxDb.Mmusculus.UCSC.mm10.knownGene * suggests
- VariantAnnotation * suggests
- annotate * suggests
- digest * suggests
- edgeR * suggests
- hgu95av2.db * suggests
- hgu95av2probe * suggests
- knitr * suggests
- pasillaBamSubset * suggests
- rmarkdown * suggests
- rtracklayer * suggests