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Open Source Science

https://github.com/bioconductor/organismdbi

Software to enable the smooth interfacing of different database packages

https://github.com/bioconductor/organismdbi

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.1%) to scientific vocabulary

Keywords

bioconductor-package core-package
Last synced: 6 months ago · JSON representation

Repository

Software to enable the smooth interfacing of different database packages

Basic Info
Statistics
  • Stars: 0
  • Watchers: 7
  • Forks: 2
  • Open Issues: 2
  • Releases: 0
Topics
bioconductor-package core-package
Created over 8 years ago · Last pushed 8 months ago
Metadata Files
Readme Changelog

README.md

OrganismDbi is an R/Bioconductor software package that provides smooth interfacing of different annotation packages.

See https://bioconductor.org/packages/OrganismDbi for more information including how to install the release version of the package (please refrain from installing directly from GitHub).

Owner

  • Name: Bioconductor
  • Login: Bioconductor
  • Kind: organization

Software for the analysis and comprehension of high-throughput genomic data

GitHub Events

Total
  • Issues event: 1
  • Push event: 5
  • Create event: 2
Last Year
  • Issues event: 1
  • Push event: 5
  • Create event: 2

Issues and Pull Requests

Last synced: 10 months ago

All Time
  • Total issues: 4
  • Total pull requests: 1
  • Average time to close issues: about 12 hours
  • Average time to close pull requests: 19 days
  • Total issue authors: 4
  • Total pull request authors: 1
  • Average comments per issue: 1.75
  • Average comments per pull request: 6.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 1
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 1
  • Pull request authors: 0
  • Average comments per issue: 0.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • JakeLehle (1)
  • vjcitn (1)
  • pachiras (1)
Pull Request Authors
  • alatiku (1)
Top Labels
Issue Labels
Pull Request Labels

Dependencies

DESCRIPTION cran
  • AnnotationDbi >= 1.33.15 depends
  • BiocGenerics >= 0.15.10 depends
  • GenomicFeatures >= 1.39.4 depends
  • R >= 2.14.0 depends
  • methods * depends
  • Biobase * imports
  • BiocManager * imports
  • DBI * imports
  • GenomicRanges >= 1.31.13 imports
  • IRanges * imports
  • RBGL * imports
  • S4Vectors >= 0.9.25 imports
  • graph * imports
  • stats * imports
  • AnnotationHub * suggests
  • BSgenome.Hsapiens.UCSC.hg19 * suggests
  • FDb.UCSC.tRNAs * suggests
  • Homo.sapiens * suggests
  • RMariaDB * suggests
  • RUnit * suggests
  • Rattus.norvegicus * suggests
  • biomaRt * suggests
  • mirbase.db * suggests
  • rtracklayer * suggests
inst/OrgPkg-template/DESCRIPTION cran
  • AnnotationDbi >= 1.17.11 depends
  • DEPENDENCIES * depends
  • GenomicFeatures * depends
  • OrganismDbi * depends
  • R >= 1.6 depends
  • methods * depends
  • AnnotationDbi * imports
  • GenomicFeatures * imports