https://github.com/bioconductor/bioconductor.org
Source code for the Bioconductor website
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
6 of 72 committers (8.3%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.9%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Source code for the Bioconductor website
Basic Info
- Host: GitHub
- Owner: Bioconductor
- Language: HTML
- Default Branch: devel
- Homepage: https://bioconductor.org/
- Size: 91.4 MB
Statistics
- Stars: 27
- Watchers: 10
- Forks: 42
- Open Issues: 26
- Releases: 1
Topics
Metadata Files
README.cloudfront.md
CloudFront
CloudFront is a content delivery network (CDN). The idea is that if a user in say, Singapore hits our web site, the files she requested will be cached in a location near her and her next access (or that of any other user in that area) will be faster.
Our CloudFront distribution can be managed through the AWS Console.
Once CloudFront is running, there isn't much you have to do.
Just be aware that when you hit bioconductor.org, you are hitting CloudFront.
A good way to test this is as follows:
$ curl -I http://bioconductor.org/
HTTP/1.1 200 OK
Content-Type: text/html
Content-Length: 16531
Connection: keep-alive
Date: Tue, 19 May 2015 17:38:25 GMT
Server: Apache/2.2.12 (Linux/SUSE)
Last-Modified: Tue, 19 May 2015 17:30:47 GMT
ETag: "62f141-4093-51672abbe1fc0"
Accept-Ranges: bytes
Cache-Control: max-age=600
Expires: Tue, 19 May 2015 17:48:25 GMT
Vary: Accept-Encoding
X-Cache: Miss from cloudfront
Via: 1.1 70d79aa19e315b47281005f9e3c25c88.cloudfront.net (CloudFront)
X-Amz-Cf-Id: 97PFtz_9dGUDk2kHEjggRwbhRkcSG0vNg9akW2y70mvyK0iKO882MA==
The X-cache and X-Amz... headers tell you you are dealing with CloudFront.
If you want to hit the web server directly, go instead to
http://master.bioconductor.org.
Different file types have different cache expiration times, this is set in the different .htaccess files for the web site.
If a file gets propagated by CloudFront that shouldn't be, you can remove it by invalidating it, go to the console page for our distribution and click on the "Invalidations" tab.
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
Total
- Issues event: 7
- Watch event: 4
- Delete event: 9
- Issue comment event: 39
- Push event: 87
- Pull request review comment event: 5
- Pull request review event: 11
- Pull request event: 64
- Fork event: 4
- Create event: 24
Last Year
- Issues event: 7
- Watch event: 4
- Delete event: 9
- Issue comment event: 39
- Push event: 87
- Pull request review comment event: 5
- Pull request review event: 11
- Pull request event: 64
- Fork event: 4
- Create event: 24
Committers
Last synced: 6 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| d.tenenbaum | d****m@b****8 | 2,131 |
| lshep | l****d@r****g | 746 |
| mtmorgan@fhcrc.org | m****n@f****g@b****8 | 718 |
| v.obenchain | v****n@b****8 | 288 |
| p.aboyoun | p****n@b****8 | 260 |
| sethf | s****f@b****8 | 122 |
| l.shepherd | l****d@b****8 | 104 |
| Martin Morgan | m****n@r****g | 93 |
| lshep | s****l@g****m | 89 |
| Charlotte Soneson | c****n@g****m | 73 |
| Nitesh Turaga | n****a@g****m | 68 |
| c.wong | c****g@b****8 | 57 |
| p.shannon | p****n@b****8 | 56 |
| Martin Morgan | M****n@R****g | 50 |
| bp289 | b****2@g****m | 47 |
| m.carlson | m****n@b****8 | 44 |
| hpages@fhcrc.org | h****s@f****g@b****8 | 41 |
| Biraj Pantha | 1****9@u****m | 40 |
| vobencha | v****n@r****g | 39 |
| Kayla-Morrell | k****l@r****g | 36 |
| Kozo Nishida | k****a@g****m | 31 |
| Aedin Culhane | a****n@j****u | 30 |
| Maria Doyle | m****e@u****e | 30 |
| Mariam Mohamed | 1****0@u****m | 30 |
| a.oles | a****s@b****8 | 29 |
| LiNk-NY | m****9@g****m | 28 |
| Hervé Pagès | h****b@g****m | 27 |
| Steve Goode | 5****e@u****m | 27 |
| Kayla-Morrell | K****l@r****g | 21 |
| j.hester | j****r@b****8 | 17 |
| and 42 more... | ||
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 43
- Total pull requests: 187
- Average time to close issues: about 1 month
- Average time to close pull requests: 12 days
- Total issue authors: 24
- Total pull request authors: 27
- Average comments per issue: 2.44
- Average comments per pull request: 0.48
- Merged pull requests: 154
- Bot issues: 0
- Bot pull requests: 11
Past Year
- Issues: 5
- Pull requests: 86
- Average time to close issues: 7 days
- Average time to close pull requests: 1 day
- Issue authors: 5
- Pull request authors: 10
- Average comments per issue: 2.6
- Average comments per pull request: 0.28
- Merged pull requests: 73
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- llrs (5)
- LTLA (4)
- HenrikBengtsson (4)
- LiNk-NY (3)
- sneumann (3)
- lshep (3)
- PeteHaitch (2)
- vjcitn (2)
- Adrianzo (2)
- mtmorgan (1)
- seandavi (1)
- Pranyub (1)
- kozo2 (1)
- aoles (1)
- hpages (1)
Pull Request Authors
- csoneson (52)
- LiNk-NY (33)
- mblue9 (21)
- jorainer (11)
- dependabot[bot] (11)
- kozo2 (7)
- jwokaty (7)
- nturaga (6)
- lgatto (4)
- mtmorgan (4)
- llrs (4)
- mikelove (3)
- almahmoud (3)
- aedin (3)
- sneumann (3)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- adsf >= 0
- descriptive_statistics >= 0
- haml >= 0
- hpricot >= 0
- htmlentities >= 0
- httparty >= 0
- json >= 0
- kramdown >= 0
- kramdown-parser-gfm >= 0
- mechanize >= 0
- mime-types >= 0
- nanoc ~> 4.0
- nokogiri >= 0
- octokit >= 0
- pg >= 0
- pry >= 0
- pry-byebug >= 0
- rack >= 0
- rack-cache >= 0
- rake >= 0
- rdiscount >= 0
- redis >= 0
- rgl >= 0
- sass >= 0
- sequel >= 0
- sqlite3 >= 0
- treetop-dcf >= 0
- twitter >= 0
- uuid >= 0
- addressable 2.5.2
- adsf 1.4.1
- buftok 0.2.0
- byebug 10.0.0
- coderay 1.1.2
- colored 1.2
- concurrent-ruby 1.0.5
- cri 2.10.1
- ddmemoize 1.0.0
- ddmetrics 1.0.0
- ddplugin 1.0.1
- descriptive_statistics 2.5.1
- domain_name 0.5.20170404
- equalizer 0.0.11
- faraday 0.17.3
- ffi 1.12.2
- haml 5.0.4
- hamster 3.0.0
- hpricot 0.8.6
- htmlentities 4.3.4
- http 3.0.0
- http-cookie 1.0.3
- http-form_data 2.0.0
- http_parser.rb 0.6.0
- httparty 0.16.0
- json 2.1.0
- kramdown 2.1.0
- kramdown-parser-gfm 1.1.0
- lazy_priority_queue 0.1.1
- macaddr 1.7.1
- mechanize 2.7.5
- memoizable 0.4.2
- method_source 0.9.0
- mime-types 3.1
- mime-types-data 3.2016.0521
- mini_portile2 2.4.0
- multi_xml 0.6.0
- multipart-post 2.0.0
- nanoc 4.9.0
- naught 1.1.0
- net-http-digest_auth 1.4.1
- net-http-persistent 2.9.4
- nokogiri 1.10.8
- ntlm-http 0.1.1
- octokit 4.16.0
- parallel 1.12.1
- pg 1.0.0
- polyglot 0.3.5
- pry 0.11.3
- pry-byebug 3.6.0
- public_suffix 3.0.2
- rack 2.1.2
- rack-cache 1.7.1
- rake 12.3.3
- rb-fsevent 0.10.2
- rb-inotify 0.9.10
- rdiscount 2.2.0.1
- redis 4.0.1
- ref 2.0.0
- rgl 0.5.3
- sass 3.5.5
- sass-listen 4.0.0
- sawyer 0.8.2
- sequel 5.5.0
- simple_oauth 0.3.1
- slow_enumerator_tools 1.1.0
- sqlite3 1.3.13
- stream 0.5
- systemu 2.6.5
- temple 0.8.0
- thread_safe 0.3.6
- tilt 2.0.8
- treetop 1.6.9
- treetop-dcf 0.2.1
- twitter 6.2.0
- unf 0.1.4
- unf_ext 0.0.7.5
- uuid 2.3.8
- webrobots 0.1.2
- ruby 2.6.5 build