Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/bioconductor/bsgenome

Software infrastructure for efficient representation of full genomes and their SNPs

https://github.com/bioconductor/bsgenome

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.3%) to scientific vocabulary

Keywords

bioconductor-package core-package
Last synced: 6 months ago · JSON representation

Repository

Software infrastructure for efficient representation of full genomes and their SNPs

Basic Info
Statistics
  • Stars: 9
  • Watchers: 12
  • Forks: 8
  • Open Issues: 9
  • Releases: 0
Topics
bioconductor-package core-package
Created over 8 years ago · Last pushed 6 months ago
Metadata Files
Readme Changelog

README.md

BSgenome is an R/Bioconductor package that provides the software infrastructure for efficient representation of full genomes and their SNPs.

See https://bioconductor.org/packages/BSgenome for more information including how to install the release version of the package (please refrain from installing directly from GitHub).

Owner

  • Name: Bioconductor
  • Login: Bioconductor
  • Kind: organization

Software for the analysis and comprehension of high-throughput genomic data

GitHub Events

Total
  • Issues event: 5
  • Member event: 1
  • Issue comment event: 2
  • Push event: 7
  • Pull request event: 1
  • Create event: 2
Last Year
  • Issues event: 5
  • Member event: 1
  • Issue comment event: 2
  • Push event: 7
  • Pull request event: 1
  • Create event: 2

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 71
  • Total pull requests: 11
  • Average time to close issues: about 2 months
  • Average time to close pull requests: 4 months
  • Total issue authors: 53
  • Total pull request authors: 7
  • Average comments per issue: 5.07
  • Average comments per pull request: 2.91
  • Merged pull requests: 8
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 4
  • Pull requests: 0
  • Average time to close issues: about 1 month
  • Average time to close pull requests: N/A
  • Issue authors: 4
  • Pull request authors: 0
  • Average comments per issue: 0.5
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • hpages (11)
  • stevenjblair (4)
  • gevro (3)
  • prmunn (2)
  • bschilder (2)
  • xiangyupan (2)
  • AO-M-Lima (1)
  • balathumma10 (1)
  • yangshichen0713 (1)
  • Guan06 (1)
  • bigguscodus (1)
  • kakopo (1)
  • monovich (1)
  • zgb963 (1)
  • MattBrauer (1)
Pull Request Authors
  • Priceless-P (3)
  • isilta (2)
  • Simplecodez (2)
  • kakopo (2)
  • bschilder (2)
  • fgeier (1)
  • LiNk-NY (1)
Top Labels
Issue Labels
outreachy dec22 (8) enhancement (1)
Pull Request Labels

Dependencies

DESCRIPTION cran
  • BiocGenerics >= 0.13.8 depends
  • Biostrings >= 2.47.6 depends
  • GenomeInfoDb >= 1.25.6 depends
  • GenomicRanges >= 1.31.10 depends
  • IRanges >= 2.13.16 depends
  • R >= 2.8.0 depends
  • S4Vectors >= 0.17.28 depends
  • methods * depends
  • rtracklayer >= 1.39.7 depends
  • BiocGenerics * imports
  • Biostrings * imports
  • GenomeInfoDb * imports
  • GenomicRanges * imports
  • IRanges * imports
  • Rsamtools * imports
  • S4Vectors * imports
  • XVector >= 0.29.3 imports
  • matrixStats * imports
  • methods * imports
  • rtracklayer * imports
  • stats * imports
  • utils * imports
  • BSgenome.Celegans.UCSC.ce2 * suggests
  • BSgenome.Hsapiens.NCBI.GRCh38 * suggests
  • BSgenome.Hsapiens.UCSC.hg38 * suggests
  • BSgenome.Hsapiens.UCSC.hg38.masked * suggests
  • BSgenome.Mmusculus.UCSC.mm10 * suggests
  • BSgenome.Rnorvegicus.UCSC.rn5 * suggests
  • BSgenome.Scerevisiae.UCSC.sacCer1 * suggests
  • Biobase * suggests
  • BiocManager * suggests
  • RUnit * suggests
  • SNPlocs.Hsapiens.dbSNP144.GRCh38 * suggests
  • TxDb.Hsapiens.UCSC.hg38.knownGene * suggests
  • TxDb.Mmusculus.UCSC.mm10.knownGene * suggests
  • XtraSNPlocs.Hsapiens.dbSNP144.GRCh38 * suggests
  • hgu95av2probe * suggests
inst/pkgtemplates/BSgenome_datapkg/DESCRIPTION cran
  • BSgenome >= depends
  • R >= 3.5.0 depends
  • BSgenome * imports
  • SUGGESTS * suggests
inst/pkgtemplates/MaskedBSgenome_datapkg/DESCRIPTION cran
  • BSgenome >= depends
  • R >= 3.5.0 depends
  • REFPKGNAME * depends
  • BSgenome * imports
  • REFPKGNAME * imports
  • SUGGESTS * suggests