https://github.com/bioconductor/rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (5.5%) to scientific vocabulary
Keywords
Repository
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Basic Info
- Host: GitHub
- Owner: Bioconductor
- License: other
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/Rsamtools
- Size: 14.3 MB
Statistics
- Stars: 28
- Watchers: 14
- Forks: 28
- Open Issues: 16
- Releases: 0
Topics
Metadata Files
README.md
Rsamtools is an R/Bioconductor package that provides an interface to the samtools, bcftools, and tabix utilities for manipulating SAM (Sequence Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.
See https://bioconductor.org/packages/Rsamtools for more information including how to install the release version of the package (please refrain from installing directly from GitHub).
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
Total
- Issues event: 3
- Watch event: 2
- Issue comment event: 3
- Member event: 1
- Push event: 4
- Fork event: 1
- Create event: 2
Last Year
- Issues event: 3
- Watch event: 2
- Issue comment event: 3
- Member event: 1
- Push event: 4
- Fork event: 1
- Create event: 2
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 53
- Total pull requests: 10
- Average time to close issues: 2 months
- Average time to close pull requests: 10 months
- Total issue authors: 45
- Total pull request authors: 9
- Average comments per issue: 4.04
- Average comments per pull request: 4.7
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- gevro (4)
- joegeorgeson (2)
- matthdsm (2)
- bschilder (2)
- kjohnsen (2)
- Mailinnia (1)
- padpadpadpad (1)
- hpages (1)
- akhst7 (1)
- vjcitn (1)
- FelixErnst (1)
- mmahmoudian (1)
- farshadf (1)
- Timothy-WANG (1)
- ericfournier2 (1)
Pull Request Authors
- js2264 (2)
- bschilder (2)
- Shians (1)
- kriemo (1)
- lh3 (1)
- mtmorgan (1)
- bellatrick (1)
- ttriche (1)
- hpages (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- Biostrings >= 2.47.6 depends
- GenomeInfoDb >= 1.1.3 depends
- GenomicRanges >= 1.31.8 depends
- R >= 3.5.0 depends
- methods * depends
- BiocGenerics >= 0.25.1 imports
- BiocParallel * imports
- IRanges >= 2.13.12 imports
- S4Vectors >= 0.17.25 imports
- XVector >= 0.19.7 imports
- bitops * imports
- stats * imports
- utils * imports
- zlibbioc * imports
- BSgenome.Hsapiens.UCSC.hg19 * suggests
- BiocStyle * suggests
- GenomicAlignments * suggests
- GenomicFeatures * suggests
- RNAseqData.HNRNPC.bam.chr14 * suggests
- RUnit * suggests
- ShortRead >= 1.19.10 suggests
- TxDb.Dmelanogaster.UCSC.dm3.ensGene * suggests
- TxDb.Hsapiens.UCSC.hg18.knownGene * suggests