https://github.com/bioconductor/csama-labs
laboratory materials for the Bressanone course
Science Score: 13.0%
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Low similarity (6.2%) to scientific vocabulary
Last synced: 9 months ago
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JSON representation
Repository
laboratory materials for the Bressanone course
Basic Info
- Host: GitHub
- Owner: Bioconductor
- Language: HTML
- Default Branch: devel
- Size: 965 MB
Statistics
- Stars: 2
- Watchers: 15
- Forks: 5
- Open Issues: 2
- Releases: 0
Created almost 2 years ago
· Last pushed 11 months ago
Metadata Files
Readme
README.md
CSAMA-labs
Laboratory materials for the Bressanone course
Organization
Labs are organized by topic, using only a short identifier
Schedule
Monday
- Intro to R and Bioconductor -
intro-to-r-bioc - Intro to Quarto -
quarto-intro - Regression -
regression
Tuesday
- Bulk RNA-seq analysis -
bulk-rnaseq - Single cell RNA-seq analysis 1 -
single-cell-rnaseq-1 - Single cell RNA-seq analysis 2 -
single-cell-rnaseq-2 - Bulk ATAC-seq analysis -
bulk-atacseq
Thursday
- Mass spectrometry-based proteomics
- End-to-end metabolomics workflow
- Multi-condition single cell RNA-seq differential analysis
- Intro to Tidyomics: tidy data analysis applied to omics data
- Spatial transcriptomics
- Trajectory analysis with slingshot and tradeSeq
- Interactive exploration with iSEE
- Working with Image Data
Instructors: setting up git pre-commit hooks
A pre-commit hook will help prevent adding of large (>10MB) files to the repository.
After cloning this repository, run the following command to set up the git hook to error on an attempted commit of large files.
sh
./scripts/install-hooks.sh
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
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- Push event: 12
- Pull request event: 4
- Fork event: 2
- Create event: 1
Last Year
- Watch event: 2
- Push event: 12
- Pull request event: 4
- Fork event: 2
- Create event: 1
Issues and Pull Requests
Last synced: over 1 year ago
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- Total pull requests: 1
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- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
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- Bot pull requests: 0
Top Authors
Issue Authors
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- mblue9 (2)
- billila (1)
- azankl (1)