https://github.com/bioconductor/delayedarray

A unified framework for working transparently with on-disk and in-memory array-like datasets

https://github.com/bioconductor/delayedarray

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Committers with academic emails
    3 of 11 committers (27.3%) from academic institutions
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (7.0%) to scientific vocabulary

Keywords

bioconductor-package core-package u24ca289073

Keywords from Contributors

genomics transcriptomics gene single-cell bioconductor bioinformatics shiny rna-seq gene-expression human-cell-atlas
Last synced: 6 months ago · JSON representation

Repository

A unified framework for working transparently with on-disk and in-memory array-like datasets

Basic Info
Statistics
  • Stars: 27
  • Watchers: 15
  • Forks: 11
  • Open Issues: 19
  • Releases: 0
Topics
bioconductor-package core-package u24ca289073
Created over 8 years ago · Last pushed 6 months ago
Metadata Files
Readme Changelog

README.md

DelayedArray

in_Bioc rank

DelayedArray is an R/Bioconductor package that provides a unified framework for working transparently with on-disk and in-memory array-like datasets.

See https://bioconductor.org/packages/DelayedArray for more information, including how to install the release version of the package (please refrain from installing directly from GitHub).

|BioC version|Status| |------------|------| | release | build platforms dependencies | | devel | build platforms dependencies |

Owner

  • Name: Bioconductor
  • Login: Bioconductor
  • Kind: organization

Software for the analysis and comprehension of high-throughput genomic data

GitHub Events

Total
  • Issues event: 9
  • Watch event: 4
  • Delete event: 1
  • Issue comment event: 16
  • Member event: 1
  • Push event: 15
  • Pull request event: 1
  • Fork event: 2
  • Create event: 6
Last Year
  • Issues event: 9
  • Watch event: 4
  • Delete event: 1
  • Issue comment event: 16
  • Member event: 1
  • Push event: 15
  • Pull request event: 1
  • Fork event: 2
  • Create event: 6

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 699
  • Total Committers: 11
  • Avg Commits per committer: 63.545
  • Development Distribution Score (DDS): 0.217
Past Year
  • Commits: 20
  • Committers: 3
  • Avg Commits per committer: 6.667
  • Development Distribution Score (DDS): 0.2
Top Committers
Name Email Commits
Hervé Pagès h****s@f****g 547
Herve Pages h****s@f****g 92
Aaron Lun a****n@c****k 16
Nitesh Turaga n****a@g****m 14
LTLA i****s@g****m 10
J Wokaty j****y@s****u 10
Peter Hickey p****y@g****m 3
vobencha v****a@g****m 2
vobencha v****n@r****g 2
A Wokaty a****y@s****u 2
Martin Morgan m****n@r****g 1
Committer Domains (Top 20 + Academic)

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 96
  • Total pull requests: 15
  • Average time to close issues: 7 months
  • Average time to close pull requests: 10 days
  • Total issue authors: 36
  • Total pull request authors: 3
  • Average comments per issue: 3.84
  • Average comments per pull request: 3.67
  • Merged pull requests: 12
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 3
  • Pull requests: 1
  • Average time to close issues: about 1 month
  • Average time to close pull requests: about 2 months
  • Issue authors: 2
  • Pull request authors: 1
  • Average comments per issue: 0.67
  • Average comments per pull request: 4.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Top Authors
Issue Authors
  • LTLA (32)
  • PeteHaitch (14)
  • hpages (7)
  • mikejiang (5)
  • Liubuntu (4)
  • mtmorgan (2)
  • ekernf01 (2)
  • bbimber (2)
  • const-ae (2)
  • lawremi (2)
  • kevinwang09 (1)
  • penglu2004 (1)
  • kdkorthauer (1)
  • mr-c (1)
  • multimeric (1)
Pull Request Authors
  • LTLA (12)
  • PeteHaitch (3)
  • LiNk-NY (1)
Top Labels
Issue Labels
enhancement (1)
Pull Request Labels

Dependencies

DESCRIPTION cran
  • BiocGenerics >= 0.43.4 depends
  • IRanges >= 2.17.3 depends
  • Matrix * depends
  • MatrixGenerics >= 1.1.3 depends
  • R >= 4.0.0 depends
  • S4Vectors >= 0.27.2 depends
  • methods * depends
  • stats4 * depends
  • stats * imports
  • BiocParallel * suggests
  • BiocStyle * suggests
  • DelayedMatrixStats * suggests
  • HDF5Array >= 1.17.12 suggests
  • RUnit * suggests
  • SummarizedExperiment * suggests
  • airway * suggests
  • genefilter * suggests
  • knitr * suggests
  • lobstr * suggests
  • rmarkdown * suggests