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Open Source Science

https://github.com/bioconductor/splicinggraphs

Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them

https://github.com/bioconductor/splicinggraphs

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
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    DOI references
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    Academic publication links
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    Academic email domains
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  • ○
    Scientific vocabulary similarity
    Low similarity (4.8%) to scientific vocabulary

Keywords

bioconductor-package
Last synced: 10 months ago · JSON representation

Repository

Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them

Basic Info
Statistics
  • Stars: 2
  • Watchers: 14
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Topics
bioconductor-package
Created almost 9 years ago · Last pushed 11 months ago
Metadata Files
Readme

README.md

SplicingGraphs is an R/Bioconductor package for creating, manipulating, and visualizing splicing graphs, as well as assigning RNA-seq reads to them.

See https://bioconductor.org/packages/SplicingGraphs for more information including how to install the release version of the package (please refrain from installing directly from GitHub).

Owner

  • Name: Bioconductor
  • Login: Bioconductor
  • Kind: organization

Software for the analysis and comprehension of high-throughput genomic data

GitHub Events

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  • Pull request event: 1
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Last synced: 11 months ago

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Top Authors
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  • LiNk-NY (1)
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Dependencies

DESCRIPTION cran
  • GenomicAlignments >= 1.1.22 depends
  • GenomicFeatures >= 1.17.13 depends
  • Rgraphviz >= 2.3.7 depends
  • BiocGenerics * imports
  • BiocParallel * imports
  • GenomeInfoDb * imports
  • GenomicAlignments * imports
  • GenomicFeatures * imports
  • GenomicRanges >= 1.23.21 imports
  • IRanges >= 2.21.2 imports
  • Rgraphviz * imports
  • Rsamtools * imports
  • S4Vectors >= 0.17.5 imports
  • graph * imports
  • graphics * imports
  • igraph * imports
  • methods * imports
  • utils * imports
  • Gviz * suggests
  • RNAseqData.HNRNPC.bam.chr14 * suggests
  • RUnit * suggests
  • TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
  • igraph * suggests