https://github.com/bioconductor/biostrings
Efficient manipulation of biological strings
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
9 of 29 committers (31.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.8%) to scientific vocabulary
Keywords
bioconductor-package
core-package
Keywords from Contributors
genomics
bioconductor
bioinformatics
gene
mass-spectrometry
rhdf5
hdf5
feature-detection
peak-detection
transcriptome
Last synced: 6 months ago
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JSON representation
Repository
Efficient manipulation of biological strings
Basic Info
- Host: GitHub
- Owner: Bioconductor
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/Biostrings
- Size: 30.3 MB
Statistics
- Stars: 65
- Watchers: 16
- Forks: 17
- Open Issues: 21
- Releases: 0
Topics
bioconductor-package
core-package
Created over 8 years ago
· Last pushed 8 months ago
Metadata Files
Readme
Changelog
README.md
Biostrings is an R/Bioconductor package for efficient manipulation of biological strings.
See https://bioconductor.org/packages/Biostrings for more information including how to install the release version of the package (please refrain from installing directly from GitHub).
Biostrings sticker courtesy of Roberto Bonelli.
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
Total
- Issues event: 12
- Watch event: 8
- Delete event: 1
- Member event: 1
- Issue comment event: 26
- Push event: 24
- Pull request event: 11
- Fork event: 2
- Create event: 2
Last Year
- Issues event: 12
- Watch event: 8
- Delete event: 1
- Member event: 1
- Issue comment event: 26
- Push event: 24
- Pull request event: 11
- Fork event: 2
- Create event: 2
Committers
Last synced: 9 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Herve Pages | h****s@f****g | 1,490 |
| Patrick Aboyoun | u****n | 507 |
| Hervé Pagès | h****s@f****g | 122 |
| Marc Carlson | m****n@f****g | 31 |
| Dan Tenenbaum | d****a@f****g | 25 |
| Robert Gentleman | r****m@f****g | 19 |
| Michael Lawrence | l****i@i****u | 18 |
| Nitesh Turaga | n****a@g****m | 14 |
| J Wokaty | j****y@s****u | 12 |
| Valerie Obenchain | v****a@f****g | 12 |
| Martin Morgan | m****n@f****g | 11 |
| Aidan Lakshman | a****7@p****u | 11 |
| Seth Falcon | s****n@f****g | 7 |
| Vince Carey | s****c@c****u | 6 |
| Laurent | l****t@c****k | 6 |
| Jeff Gentry | j****y@j****u | 4 |
| Chao-Jen Wong | c****2@f****g | 3 |
| Felix Ernst | f****t@u****e | 2 |
| vobencha | v****a@g****m | 2 |
| vobencha | v****n@r****g | 2 |
| A Wokaty | a****y@s****u | 2 |
| Marcel Ramos | L****Y | 2 |
| Wolfgang Huber | w****r@d****e | 1 |
| Nishant Gopalakrishnan | n****k@f****g | 1 |
| Nianhua Li | n****i@f****g | 1 |
| Albert Vill | a****6@c****u | 1 |
| Haleema Khan | h****8@g****m | 1 |
| Kieran O'Neill | o****a@g****m | 1 |
| digitalwright | e****t@p****u | 1 |
Committer Domains (Top 20 + Academic)
fhcrc.org: 10
pitt.edu: 2
sph.cuny.edu: 2
cornell.edu: 1
dkfz-heidelberg.de: 1
roswellpark.org: 1
ulb.ac.be: 1
jimmy.harvard.edu: 1
cbs.dtu.dk: 1
channing.harvard.edu: 1
iastate.edu: 1
fredhutch.org: 1
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 86
- Total pull requests: 37
- Average time to close issues: 9 months
- Average time to close pull requests: 4 months
- Total issue authors: 58
- Total pull request authors: 12
- Average comments per issue: 3.92
- Average comments per pull request: 4.03
- Merged pull requests: 17
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 10
- Pull requests: 7
- Average time to close issues: 8 days
- Average time to close pull requests: about 2 months
- Issue authors: 7
- Pull request authors: 1
- Average comments per issue: 1.0
- Average comments per pull request: 2.14
- Merged pull requests: 3
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- LTLA (8)
- gevro (8)
- ahl27 (5)
- jayoung (5)
- FelixErnst (3)
- thallinger (2)
- jan-glx (2)
- DarioS (2)
- Andreas-Bio (2)
- kmakat (1)
- mikemc (1)
- peteryzheng (1)
- Abrar2652 (1)
- hpages (1)
- jwokaty (1)
Pull Request Authors
- ahl27 (18)
- raoulkam (7)
- FelixErnst (4)
- LiNk-NY (3)
- villafup (2)
- hsadia538 (2)
- BerylKanali (2)
- twmccart (2)
- LTLA (1)
- oneillkza (1)
- digitalwright (1)
- acvill (1)
Top Labels
Issue Labels
enhancement (1)
Pull Request Labels
Dependencies
DESCRIPTION
cran
- BiocGenerics >= 0.37.0 depends
- GenomeInfoDb * depends
- IRanges >= 2.31.2 depends
- R >= 4.0.0 depends
- S4Vectors >= 0.27.12 depends
- XVector >= 0.37.1 depends
- methods * depends
- Rmpi * enhances
- crayon * imports
- grDevices * imports
- graphics * imports
- methods * imports
- stats * imports
- utils * imports
- BSgenome >= 1.13.14 suggests
- BSgenome.Celegans.UCSC.ce2 >= 1.3.11 suggests
- BSgenome.Dmelanogaster.UCSC.dm3 >= 1.3.11 suggests
- BSgenome.Hsapiens.UCSC.hg18 * suggests
- BiocStyle * suggests
- GenomicFeatures >= 1.3.14 suggests
- RUnit * suggests
- affy >= 1.41.3 suggests
- affydata >= 1.11.5 suggests
- drosophila2probe * suggests
- hgu133aprobe * suggests
- hgu95av2cdf * suggests
- hgu95av2probe * suggests
- knitr * suggests