https://github.com/bioconductor/iranges
Foundation of integer range manipulation in Bioconductor
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 26 committers (7.7%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.1%) to scientific vocabulary
Keywords
bioconductor-package
core-package
Keywords from Contributors
genomics
bioconductor
bioinformatics
gene
transcriptomics
mass-spectrometry
u24ca289073
proteomics
hdf5
rhdf5
Last synced: 6 months ago
·
JSON representation
Repository
Foundation of integer range manipulation in Bioconductor
Basic Info
- Host: GitHub
- Owner: Bioconductor
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/IRanges
- Size: 4.28 MB
Statistics
- Stars: 22
- Watchers: 16
- Forks: 11
- Open Issues: 13
- Releases: 0
Topics
bioconductor-package
core-package
Created over 8 years ago
· Last pushed 6 months ago
Metadata Files
Readme
Changelog
README.md
IRanges is an R/Bioconductor package that provides the foundation of integer range manipulation in Bioconductor.
See https://bioconductor.org/packages/IRanges for more information including how to install the release version of the package (please refrain from installing directly from GitHub).
IRanges sticker courtesy of Roberto Bonelli.
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
Total
- Issues event: 4
- Watch event: 1
- Issue comment event: 3
- Member event: 1
- Push event: 15
- Fork event: 1
- Create event: 2
Last Year
- Issues event: 4
- Watch event: 1
- Issue comment event: 3
- Member event: 1
- Push event: 15
- Fork event: 1
- Create event: 2
Committers
Last synced: over 2 years ago
Top Committers
| Name | Commits | |
|---|---|---|
| Herve Pages | h****s@f****g | 1,236 |
| Michael Lawrence | l****i@i****u | 816 |
| Patrick Aboyoun | u****n | 708 |
| Hervé Pagès | h****s@f****g | 211 |
| Valerie Obenchain | v****a@f****g | 79 |
| Hervé Pagès | h****b@g****m | 37 |
| Michael Lawrence | m****a@g****m | 36 |
| Martin Morgan | m****n@f****g | 32 |
| Dan Tenenbaum | d****a@f****g | 24 |
| Nitesh Turaga | n****a@g****m | 14 |
| Lori Shepherd | L****d@R****g | 8 |
| LTLA | i****s@g****m | 8 |
| Nishant Gopalakrishnan | n****k@f****g | 5 |
| J Wokaty | j****y@s****u | 4 |
| LiNk-NY | m****9@g****m | 3 |
| Wolfgang Huber | w****r@d****e | 2 |
| Felix Ernst | f****t@u****e | 2 |
| vobencha | v****n@r****g | 2 |
| Peter Hickey | p****y@g****m | 2 |
| Steve Lianoglou | s****u@g****m | 2 |
| vobencha | v****a@g****m | 2 |
| J Wokaty | j****y | 2 |
| Marc Carlson | m****n@f****g | 2 |
| Deepayan Sarkar | d****r@f****g | 1 |
| Chao-Jen Wong | c****2@f****g | 1 |
| Sanchit Saini | s****4@g****m | 1 |
Committer Domains (Top 20 + Academic)
fhcrc.org: 8
roswellpark.org: 2
ulb.ac.be: 1
dkfz-heidelberg.de: 1
sph.cuny.edu: 1
gene.com: 1
fredhutch.org: 1
iastate.edu: 1
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 43
- Total pull requests: 11
- Average time to close issues: 16 days
- Average time to close pull requests: 5 months
- Total issue authors: 22
- Total pull request authors: 8
- Average comments per issue: 2.81
- Average comments per pull request: 3.18
- Merged pull requests: 5
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 0
- Average time to close issues: 4 days
- Average time to close pull requests: N/A
- Issue authors: 1
- Pull request authors: 0
- Average comments per issue: 1.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- LTLA (11)
- hpages (7)
- sa-lee (2)
- PeteHaitch (2)
- FelixErnst (2)
- rcorty (2)
- grimbough (1)
- TrumanZYX (1)
- raphaelbetschart (1)
- ssayols (1)
- zyllifeworld (1)
- AxelRosendahlHuber (1)
- csoneson (1)
- mollysrour (1)
- jakob-wirbel (1)
Pull Request Authors
- PeteHaitch (3)
- Jiefei-Wang (2)
- balwierz (1)
- rcorty (1)
- LTLA (1)
- sanchit-saini (1)
- FelixErnst (1)
- sonali8434 (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
DESCRIPTION
cran
- BiocGenerics >= 0.39.2 depends
- R >= 4.0.0 depends
- S4Vectors >= 0.33.3 depends
- methods * depends
- stats * depends
- utils * depends
- stats4 * imports
- BSgenome.Celegans.UCSC.ce2 * suggests
- BiocStyle * suggests
- GenomicAlignments * suggests
- GenomicFeatures * suggests
- GenomicRanges * suggests
- RUnit * suggests
- Rsamtools * suggests
- XVector * suggests
- pasillaBamSubset * suggests