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Open Source Science

https://github.com/bioconductor/genomicfeatures

Query the gene models of a given organism/assembly

https://github.com/bioconductor/genomicfeatures

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
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    DOI references
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    Scientific vocabulary similarity
    Low similarity (5.0%) to scientific vocabulary

Keywords

bioconductor-package core-package
Last synced: 6 months ago · JSON representation

Repository

Query the gene models of a given organism/assembly

Basic Info
Statistics
  • Stars: 27
  • Watchers: 7
  • Forks: 11
  • Open Issues: 9
  • Releases: 0
Topics
bioconductor-package core-package
Created over 8 years ago · Last pushed 7 months ago
Metadata Files
Readme Changelog

README.md

GenomicFeatures is an R/Bioconductor package for querying the gene models of a given organism/assembly.

See https://bioconductor.org/packages/GenomicFeatures for more information including how to install the release version of the package (please refrain from installing directly from GitHub).

Owner

  • Name: Bioconductor
  • Login: Bioconductor
  • Kind: organization

Software for the analysis and comprehension of high-throughput genomic data

GitHub Events

Total
  • Issues event: 2
  • Watch event: 2
  • Issue comment event: 2
  • Push event: 12
  • Fork event: 1
  • Create event: 2
Last Year
  • Issues event: 2
  • Watch event: 2
  • Issue comment event: 2
  • Push event: 12
  • Fork event: 1
  • Create event: 2

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 61
  • Total pull requests: 5
  • Average time to close issues: 4 months
  • Average time to close pull requests: about 1 month
  • Total issue authors: 50
  • Total pull request authors: 5
  • Average comments per issue: 3.48
  • Average comments per pull request: 3.2
  • Merged pull requests: 2
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 5
  • Pull requests: 0
  • Average time to close issues: about 1 month
  • Average time to close pull requests: N/A
  • Issue authors: 5
  • Pull request authors: 0
  • Average comments per issue: 1.6
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
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Top Authors
Issue Authors
  • Roleren (5)
  • hpages (5)
  • cmatKhan (2)
  • mjsteinbaugh (2)
  • FelixErnst (2)
  • anmej (1)
  • jambler24 (1)
  • jmacdon (1)
  • prmunn (1)
  • balwierz (1)
  • jamesdalg (1)
  • under-score (1)
  • sghignone (1)
  • lshep (1)
  • LliliansCalvo (1)
Pull Request Authors
  • jmacdon (1)
  • lshep (1)
  • LiNk-NY (1)
  • Roleren (1)
  • sanchit-saini (1)
Top Labels
Issue Labels
enhancement (1)
Pull Request Labels

Dependencies

DESCRIPTION cran
  • AnnotationDbi >= 1.41.4 depends
  • BiocGenerics >= 0.1.0 depends
  • GenomeInfoDb >= 1.25.7 depends
  • GenomicRanges >= 1.31.17 depends
  • IRanges >= 2.13.23 depends
  • R >= 3.5.0 depends
  • S4Vectors >= 0.17.29 depends
  • Biobase >= 2.15.1 imports
  • BiocIO * imports
  • Biostrings >= 2.47.6 imports
  • DBI * imports
  • RCurl * imports
  • RSQLite >= 2.0 imports
  • XVector >= 0.19.7 imports
  • biomaRt >= 2.17.1 imports
  • methods * imports
  • rtracklayer >= 1.51.5 imports
  • stats * imports
  • tools * imports
  • utils * imports
  • AnnotationFilter * suggests
  • BSgenome * suggests
  • BSgenome.Celegans.UCSC.ce11 * suggests
  • BSgenome.Dmelanogaster.UCSC.dm3 >= 1.3.17 suggests
  • BSgenome.Hsapiens.UCSC.hg19 >= 1.3.17 suggests
  • BiocStyle * suggests
  • FDb.UCSC.tRNAs * suggests
  • GenomicAlignments >= 1.15.7 suggests
  • RMariaDB * suggests
  • RUnit * suggests
  • Rsamtools * suggests
  • SNPlocs.Hsapiens.dbSNP144.GRCh38 * suggests
  • TxDb.Celegans.UCSC.ce11.ensGene * suggests
  • TxDb.Dmelanogaster.UCSC.dm3.ensGene >= 2.7.1 suggests
  • TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
  • TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts * suggests
  • TxDb.Hsapiens.UCSC.hg38.knownGene >= 3.4.6 suggests
  • TxDb.Mmusculus.UCSC.mm10.knownGene >= 3.4.7 suggests
  • ensembldb * suggests
  • knitr * suggests
  • mirbase.db * suggests
  • org.Hs.eg.db * suggests
  • org.Mm.eg.db * suggests
  • pasillaBamSubset >= 0.0.5 suggests
inst/txdb-template/DESCRIPTION cran
  • GenomicFeatures >= depends
  • AnnotationDbi * imports