https://github.com/bioconductor/genomeinfodb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.1%) to scientific vocabulary
Keywords
Repository
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
Basic Info
- Host: GitHub
- Owner: Bioconductor
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/GenomeInfoDb
- Size: 83 MB
Statistics
- Stars: 33
- Watchers: 7
- Forks: 13
- Open Issues: 5
- Releases: 0
Topics
Metadata Files
README.md
GenomeInfoDb is an R/Bioconductor package that provides utilities for manipulating chromosome names, including modifying them to follow a particular naming style.
See https://bioconductor.org/packages/GenomeInfoDb for more information including how to install the release version of the package (please refrain from installing directly from GitHub).
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
Total
- Issues event: 7
- Watch event: 3
- Issue comment event: 10
- Push event: 25
- Create event: 1
Last Year
- Issues event: 7
- Watch event: 3
- Issue comment event: 10
- Push event: 25
- Create event: 1
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 75
- Total pull requests: 28
- Average time to close issues: 2 months
- Average time to close pull requests: about 1 month
- Total issue authors: 48
- Total pull request authors: 6
- Average comments per issue: 5.83
- Average comments per pull request: 1.93
- Merged pull requests: 19
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 3
- Pull requests: 0
- Average time to close issues: 1 day
- Average time to close pull requests: N/A
- Issue authors: 2
- Pull request authors: 0
- Average comments per issue: 1.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- hpages (20)
- mjsteinbaugh (4)
- hannahvanm (2)
- mzytnicki (2)
- LTLA (2)
- sanchit-saini (2)
- vjcitn (2)
- Shicheng-Guo (1)
- clarkzor (1)
- haozhaozhe (1)
- Kayla-Morrell (1)
- chancharikmitra (1)
- daanhazelaar (1)
- andradejon (1)
- yesitsjess (1)
Pull Request Authors
- kakopo (10)
- Simplecodez (8)
- villafup (4)
- Priceless-P (4)
- LiNk-NY (2)
- hsadia538 (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- BiocGenerics >= 0.37.0 depends
- IRanges >= 2.13.12 depends
- R >= 4.0.0 depends
- S4Vectors >= 0.25.12 depends
- methods * depends
- GenomeInfoDbData * imports
- RCurl * imports
- stats * imports
- stats4 * imports
- utils * imports
- BSgenome * suggests
- BSgenome.Celegans.UCSC.ce2 * suggests
- BSgenome.Hsapiens.NCBI.GRCh38 * suggests
- BSgenome.Scerevisiae.UCSC.sacCer2 * suggests
- BiocStyle * suggests
- GenomicAlignments * suggests
- GenomicFeatures * suggests
- GenomicRanges * suggests
- RUnit * suggests
- Rsamtools * suggests
- TxDb.Dmelanogaster.UCSC.dm3.ensGene * suggests
- knitr * suggests