https://github.com/bioconductor/biobase
Biobase: Base functions for Bioconductor
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
7 of 34 committers (20.6%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.8%) to scientific vocabulary
Keywords
bioconductor-package
core-package
Keywords from Contributors
genome
bioconductor
bioinformatics
gene
rhdf5
hdf5
u24ca289073
mass-spectrometry
image-analysis
proteome
Last synced: 6 months ago
·
JSON representation
Repository
Biobase: Base functions for Bioconductor
Basic Info
- Host: GitHub
- Owner: Bioconductor
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/Biobase
- Size: 5.62 MB
Statistics
- Stars: 9
- Watchers: 7
- Forks: 10
- Open Issues: 2
- Releases: 0
Topics
bioconductor-package
core-package
Created over 8 years ago
· Last pushed 10 months ago
Metadata Files
Readme
Changelog
README.md
Biobase is an R/Bioconductor package that implements base functions for Bioconductor.
See https://bioconductor.org/packages/Biobase for more information including how to install the release version of the package (please refrain from installing directly from GitHub).
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
Total
- Push event: 1
- Create event: 2
Last Year
- Push event: 1
- Create event: 2
Committers
Last synced: 8 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Martin Morgan | m****n@f****g | 238 |
| Robert Gentleman | r****m@f****g | 152 |
| jhnzhang | u****n | 135 |
| Jeff Gentry | j****y@j****u | 100 |
| Seth Falcon | s****n@f****g | 80 |
| Vince Carey | s****c@c****u | 45 |
| Wolfgang Huber | w****r@d****e | 40 |
| Dan Tenenbaum | d****a@f****g | 36 |
| Herve Pages | h****s@f****g | 35 |
| Nitesh Turaga | n****a@g****m | 16 |
| J Wokaty | j****y | 14 |
| Oleg Sklyar | o****r@e****k | 13 |
| Martin Morgan | m****n@r****g | 12 |
| Hervé Pagès | h****s@f****g | 10 |
| H Bengtsson | hb@a****g | 10 |
| Valerie Obenchain | v****a@f****g | 7 |
| Jianhua Zhang | j****g@j****u | 4 |
| Alan Katz | a****z@f****g | 3 |
| Haleema Khan | h****8@g****m | 3 |
| James MacDonald | j****n@m****u | 3 |
| Martin Maechler | m****r@s****h | 3 |
| LiNk-NY | m****z@r****g | 3 |
| A Wokaty | a****y@s****u | 2 |
| Florian Hahne | f****e@d****e | 2 |
| Nishant Gopalakrishnan | n****k@f****g | 2 |
| Ting-Yuan Liu | t****u@f****g | 2 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| Chao-Jen Wong | c****2@f****g | 1 |
| Jeroen Ooms | j****s@g****m | 1 |
| and 4 more... | ||
Committer Domains (Top 20 + Academic)
fhcrc.org: 11
roswellpark.org: 4
dkfz-heidelberg.de: 2
jimmy.harvard.edu: 2
gene.com: 1
posit.co: 1
sph.cuny.edu: 1
stat.math.ethz.ch: 1
med.umich.edu: 1
aroma-project.org: 1
fredhutch.org: 1
ebi.ac.uk: 1
channing.harvard.edu: 1
Issues and Pull Requests
Last synced: 8 months ago
All Time
- Total issues: 12
- Total pull requests: 10
- Average time to close issues: 10 days
- Average time to close pull requests: 4 months
- Total issue authors: 10
- Total pull request authors: 8
- Average comments per issue: 2.67
- Average comments per pull request: 3.0
- Merged pull requests: 7
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: 12 days
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 6.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- HenrikBengtsson (3)
- LiNk-NY (1)
- EmmaRuiz (1)
- BAREJAA (1)
- jdblischak (1)
- qinzhu (1)
- p-smirnov (1)
- mbstadler (1)
- StephaneKazmierczak (1)
Pull Request Authors
- hsadia538 (3)
- p-smirnov (2)
- jeroen (2)
- kevinushey (2)
- HenrikBengtsson (1)
- raoulkam (1)
- Kayla-Morrell (1)
- villafup (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
DESCRIPTION
cran
- BiocGenerics >= 0.27.1 depends
- R >= 2.10 depends
- utils * depends
- methods * imports
- ALL * suggests
- RUnit * suggests
- golubEsets * suggests
- tkWidgets * suggests
- tools * suggests
inst/ExpressionSet/DESCRIPTION
cran
- Biobase * depends
inst/Code/DESCRIPTION
cran