https://github.com/bioconductor/organism.dplyr
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
2 of 16 committers (12.5%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (1.3%) to scientific vocabulary
Keywords
bioconductor-package
core-package
Keywords from Contributors
genomics
gene
bioconductor
u24ca289073
transcriptomics
bioinformatics
core-services
mass-spectrometry
rhdf5
hdf5
Last synced: 6 months ago
·
JSON representation
Repository
Basic Info
- Host: GitHub
- Owner: Bioconductor
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/Organism.dplyr
- Size: 2.22 MB
Statistics
- Stars: 3
- Watchers: 10
- Forks: 3
- Open Issues: 8
- Releases: 0
Topics
bioconductor-package
core-package
Created over 9 years ago
· Last pushed 8 months ago
Metadata Files
Readme
README.md
The package creates an on disk sqlite database to hold data of an organism combined from an 'org' package (e.g., org.Hs.eg.db) and agenome coordinate functionality of the 'TxDb' package (e.g., TxDb.Hsapiens.UCSC.hg38.knownGene). It aims to provide an integrated presentation of identifiers and genomic coordinates.
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
Total
- Push event: 4
- Create event: 2
Last Year
- Push event: 4
- Create event: 2
Committers
Last synced: 8 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Martin Morgan | m****n@r****g | 122 |
| Daniel Van Twisk | d****k@r****g | 50 |
| yubocheng | y****g@r****g | 46 |
| Nitesh Turaga | n****a@g****m | 15 |
| J Wokaty | j****y@s****u | 10 |
| d.vantwisk | d****k@b****8 | 8 |
| Lori Shepherd | s****l@g****m | 7 |
| Hervé Pagès | h****s@f****g | 3 |
| vobencha | v****a@g****m | 2 |
| vobencha | v****n@r****g | 2 |
| hpages@fhcrc.org | h****s@f****g@b****8 | 2 |
| A Wokaty | a****y@s****u | 2 |
| Herve Pages | h****s@f****g | 2 |
| vobencha | v****a@f****g | 1 |
| mtmorgan@fhcrc.org | m****n@f****g@b****8 | 1 |
| Martin Morgan | m****n@f****g | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 8 months ago
All Time
- Total issues: 19
- Total pull requests: 1
- Average time to close issues: 10 days
- Average time to close pull requests: about 1 hour
- Total issue authors: 5
- Total pull request authors: 1
- Average comments per issue: 1.42
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- mtmorgan (14)
- vjcitn (2)
- dvantwisk (1)
- marwa38 (1)
- mari-lynne (1)
Pull Request Authors
- vobencha (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
DESCRIPTION
cran
- AnnotationFilter >= 1.1.3 depends
- R >= 3.4 depends
- dplyr >= 0.7.0 depends
- AnnotationDbi * imports
- BiocFileCache * imports
- DBI * imports
- GenomeInfoDb * imports
- GenomicFeatures * imports
- GenomicRanges * imports
- IRanges * imports
- RSQLite * imports
- S4Vectors * imports
- dbplyr * imports
- methods * imports
- rlang * imports
- tibble * imports
- tools * imports
- utils * imports
- BiocStyle * suggests
- TxDb.Hsapiens.UCSC.hg38.knownGene * suggests
- TxDb.Mmusculus.UCSC.mm10.ensGene * suggests
- ggplot2 * suggests
- knitr * suggests
- org.Hs.eg.db * suggests
- org.Mm.eg.db * suggests
- rmarkdown * suggests
- testthat * suggests