Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/bioconductor/variantannotation

Annotation of Genetic Variants

https://github.com/bioconductor/variantannotation

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic links in README
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (0.5%) to scientific vocabulary

Keywords

bioconductor-package core-package
Last synced: 6 months ago · JSON representation

Repository

Annotation of Genetic Variants

Basic Info
Statistics
  • Stars: 28
  • Watchers: 8
  • Forks: 20
  • Open Issues: 34
  • Releases: 0
Topics
bioconductor-package core-package
Created over 8 years ago · Last pushed 8 months ago
Metadata Files
Changelog

Owner

  • Name: Bioconductor
  • Login: Bioconductor
  • Kind: organization

Software for the analysis and comprehension of high-throughput genomic data

GitHub Events

Total
  • Issues event: 1
  • Watch event: 3
  • Push event: 4
  • Create event: 2
Last Year
  • Issues event: 1
  • Watch event: 3
  • Push event: 4
  • Create event: 2

Issues and Pull Requests

Last synced: over 1 year ago

All Time
  • Total issues: 76
  • Total pull requests: 14
  • Average time to close issues: 2 months
  • Average time to close pull requests: 2 months
  • Total issue authors: 47
  • Total pull request authors: 8
  • Average comments per issue: 3.51
  • Average comments per pull request: 2.5
  • Merged pull requests: 12
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 16
  • Pull requests: 0
  • Average time to close issues: about 12 hours
  • Average time to close pull requests: N/A
  • Issue authors: 9
  • Pull request authors: 0
  • Average comments per issue: 2.56
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • DarioS (13)
  • d-cameron (4)
  • jayoung (3)
  • Liubuntu (2)
  • lima1 (2)
  • ChristofferFlensburg (2)
  • mschubert (2)
  • bschilder (2)
  • lawremi (2)
  • LTLA (2)
  • FunGeST (1)
  • igrabski (1)
  • ojcharles (1)
  • vobencha (1)
  • jonocarroll (1)
Pull Request Authors
  • Liubuntu (5)
  • vjcitn (2)
  • jmarshall (2)
  • lcougnaud (2)
  • mschubert (1)
  • villafup (1)
  • d-cameron (1)
  • bschilder (1)
Top Labels
Issue Labels
enhancement (1)
Pull Request Labels

Dependencies

DESCRIPTION cran
  • BiocGenerics >= 0.37.0 depends
  • GenomeInfoDb >= 1.15.2 depends
  • GenomicRanges >= 1.41.5 depends
  • MatrixGenerics * depends
  • R >= 4.0.0 depends
  • Rsamtools >= 1.99.0 depends
  • SummarizedExperiment >= 1.19.5 depends
  • methods * depends
  • AnnotationDbi >= 1.27.9 imports
  • BSgenome >= 1.47.3 imports
  • Biobase * imports
  • Biostrings >= 2.57.2 imports
  • DBI * imports
  • GenomicFeatures >= 1.31.3 imports
  • IRanges >= 2.23.9 imports
  • S4Vectors >= 0.27.12 imports
  • XVector >= 0.29.2 imports
  • rtracklayer >= 1.39.7 imports
  • utils * imports
  • zlibbioc * imports
  • AnnotationHub * suggests
  • BSgenome.Hsapiens.UCSC.hg19 * suggests
  • BiocStyle * suggests
  • PolyPhen.Hsapiens.dbSNP131 * suggests
  • RUnit * suggests
  • SIFT.Hsapiens.dbSNP132 * suggests
  • SIFT.Hsapiens.dbSNP137 * suggests
  • SNPlocs.Hsapiens.dbSNP.20101109 * suggests
  • TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
  • ggplot2 * suggests
  • snpStats * suggests