https://github.com/bioconductor/genomicalignments
Representation and manipulation of short genomic alignments
Science Score: 26.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
-
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (4.4%) to scientific vocabulary
Keywords
bioconductor-package
core-package
Last synced: 6 months ago
·
JSON representation
Repository
Representation and manipulation of short genomic alignments
Basic Info
- Host: GitHub
- Owner: Bioconductor
- Language: R
- Default Branch: devel
- Homepage: https://bioconductor.org/packages/GenomicAlignments
- Size: 6.09 MB
Statistics
- Stars: 10
- Watchers: 10
- Forks: 15
- Open Issues: 11
- Releases: 0
Topics
bioconductor-package
core-package
Created over 8 years ago
· Last pushed 8 months ago
Metadata Files
Readme
Changelog
README.md
GenomicAlignments is an R/Bioconductor package for representing and manipulating short genomic alignments (typically aligned reads).
See https://bioconductor.org/packages/GenomicAlignments for more information including how to install the release version of the package (please refrain from installing directly from GitHub).
Owner
- Name: Bioconductor
- Login: Bioconductor
- Kind: organization
- Website: https://bioconductor.org
- Repositories: 156
- Profile: https://github.com/Bioconductor
Software for the analysis and comprehension of high-throughput genomic data
GitHub Events
Total
- Issues event: 3
- Watch event: 3
- Issue comment event: 7
- Push event: 5
- Pull request event: 2
- Create event: 2
Last Year
- Issues event: 3
- Watch event: 3
- Issue comment event: 7
- Push event: 5
- Pull request event: 2
- Create event: 2
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 25
- Total pull requests: 14
- Average time to close issues: 3 months
- Average time to close pull requests: 9 months
- Total issue authors: 22
- Total pull request authors: 8
- Average comments per issue: 2.96
- Average comments per pull request: 4.14
- Merged pull requests: 5
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 0
- Average time to close issues: about 4 hours
- Average time to close pull requests: N/A
- Issue authors: 2
- Pull request authors: 0
- Average comments per issue: 2.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- gevro (2)
- hpages (2)
- daewoooo (2)
- c-mertes (1)
- mgperry (1)
- sfragkoul (1)
- FelixErnst (1)
- caspargross (1)
- sda910722 (1)
- alexg9010 (1)
- alkodsi (1)
- jayoung (1)
- rcastelo (1)
- LTLA (1)
- 3top15243 (1)
Pull Request Authors
- fedxa (4)
- rcastelo (4)
- raoulkam (2)
- Rohit-Satyam (2)
- BerylKanali (2)
- Chisomgold (2)
- c-mertes (1)
- gaoce (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
DESCRIPTION
cran
- BiocGenerics >= 0.37.0 depends
- Biostrings >= 2.55.7 depends
- GenomeInfoDb >= 1.13.1 depends
- GenomicRanges >= 1.41.5 depends
- IRanges >= 2.23.9 depends
- R >= 4.0.0 depends
- Rsamtools >= 1.31.2 depends
- S4Vectors >= 0.27.12 depends
- SummarizedExperiment >= 1.9.13 depends
- methods * depends
- BiocGenerics * imports
- BiocParallel * imports
- Biostrings * imports
- GenomicRanges * imports
- IRanges * imports
- Rsamtools * imports
- S4Vectors * imports
- methods * imports
- stats * imports
- utils * imports
- BSgenome * suggests
- BSgenome.Dmelanogaster.UCSC.dm3 * suggests
- BSgenome.Hsapiens.UCSC.hg19 * suggests
- BiocStyle * suggests
- DESeq2 * suggests
- GenomicFeatures * suggests
- RNAseqData.HNRNPC.bam.chr14 * suggests
- RUnit * suggests
- ShortRead * suggests
- TxDb.Dmelanogaster.UCSC.dm3.ensGene * suggests
- TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
- edgeR * suggests
- pasillaBamSubset * suggests
- rtracklayer * suggests