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Open Source Science

https://github.com/bioconductor/summarizedexperiment

A container (S4 class) for matrix-like assays

https://github.com/bioconductor/summarizedexperiment

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
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    Academic email domains
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    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.4%) to scientific vocabulary

Keywords

bioconductor-package core-package
Last synced: 6 months ago · JSON representation

Repository

A container (S4 class) for matrix-like assays

Basic Info
Statistics
  • Stars: 35
  • Watchers: 10
  • Forks: 9
  • Open Issues: 24
  • Releases: 0
Topics
bioconductor-package core-package
Created over 8 years ago · Last pushed 8 months ago
Metadata Files
Readme Changelog

README.md

SummarizedExperiment is an R/Bioconductor package that implements a container (S4 class) for matrix-like assays.

See https://bioconductor.org/packages/SummarizedExperiment for more information including how to install the release version of the package (please refrain from installing directly from GitHub).

SummarizedExperiment sticker courtesy of Mike Love.

Owner

  • Name: Bioconductor
  • Login: Bioconductor
  • Kind: organization

Software for the analysis and comprehension of high-throughput genomic data

GitHub Events

Total
  • Issues event: 5
  • Watch event: 5
  • Issue comment event: 11
  • Push event: 12
  • Create event: 2
Last Year
  • Issues event: 5
  • Watch event: 5
  • Issue comment event: 11
  • Push event: 12
  • Create event: 2

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 70
  • Total pull requests: 16
  • Average time to close issues: 2 months
  • Average time to close pull requests: 10 days
  • Total issue authors: 41
  • Total pull request authors: 7
  • Average comments per issue: 3.3
  • Average comments per pull request: 2.88
  • Merged pull requests: 13
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 5
  • Pull requests: 0
  • Average time to close issues: 1 day
  • Average time to close pull requests: N/A
  • Issue authors: 4
  • Pull request authors: 0
  • Average comments per issue: 0.8
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • LTLA (14)
  • hpages (5)
  • TuomasBorman (4)
  • vjcitn (3)
  • lgatto (2)
  • Jiefei-Wang (2)
  • lawremi (2)
  • PeteHaitch (2)
  • DarioS (2)
  • LiNk-NY (2)
  • mtmorgan (2)
  • mingl1997 (1)
  • Georgy415 (1)
  • tavareshugo (1)
  • marcpaga (1)
Pull Request Authors
  • LTLA (6)
  • PeteHaitch (3)
  • LiNk-NY (3)
  • Jiefei-Wang (1)
  • Liubuntu (1)
  • schifferl (1)
  • kevinrue (1)
Top Labels
Issue Labels
question (1) enhancement (1)
Pull Request Labels

Dependencies

DESCRIPTION cran
  • Biobase * depends
  • GenomicRanges >= 1.41.5 depends
  • MatrixGenerics >= 1.1.3 depends
  • R >= 4.0.0 depends
  • methods * depends
  • BiocGenerics >= 0.37.0 imports
  • DelayedArray >= 0.15.10 imports
  • GenomeInfoDb >= 1.13.1 imports
  • IRanges >= 2.23.9 imports
  • Matrix * imports
  • S4Vectors >= 0.33.7 imports
  • stats * imports
  • tools * imports
  • utils * imports
  • AnnotationDbi * suggests
  • BiocStyle * suggests
  • GenomicFeatures * suggests
  • HDF5Array >= 1.7.5 suggests
  • RUnit * suggests
  • TxDb.Hsapiens.UCSC.hg19.knownGene * suggests
  • airway >= 1.15.1 suggests
  • annotate * suggests
  • digest * suggests
  • hgu95av2.db * suggests
  • jsonlite * suggests
  • knitr * suggests
  • rhdf5 * suggests
  • rmarkdown * suggests
  • testthat * suggests